* using log directory ‘/Volumes/Builds/packages/sonoma-arm64/results/4.6/ICESat2VegR.Rcheck’
* using R version 4.6.1 (2026-06-24)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sequoia 15.7.1
* using session charset: UTF-8
* current time: 2026-09-16 23:39:57 UTC
* checking for file ‘ICESat2VegR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ICESat2VegR’ version ‘0.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ICESat2VegR’ can be installed ... [34s/35s] OK
See 'https://www.r-project.org/nosvn/R.check/r-release-macos-arm64/ICESat2VegR-00install.html' for details.
* used C compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
* used C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’
* used SDK: ‘MacOSX14.5.sdk’
* checking installed package size ... INFO
  installed size is 79.1Mb
  sub-directories of 1Mb or more:
    extdata   6.0Mb
    libs     62.5Mb
    proj      9.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking whether startup messages can be suppressed ... [3s/3s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking examples ... [6s/6s] ERROR
Running examples in ‘ICESat2VegR-Ex.R’ failed
The error most likely occurred in:

> ### Name: ATL03_ATL08_photons_attributes_dt_join
> ### Title: Join ATL03 and ATL08 photons attributes
> ### Aliases: ATL03_ATL08_photons_attributes_dt_join
> 
> ### ** Examples
> 
> if (requireNamespace("hdf5r", quietly = TRUE)) {
+ # Specifying the path to ATL03 file
+ atl03_path <- system.file("extdata",
+   "atl03_clip.h5",
+   package = "ICESat2VegR"
+ )
+ 
+ # Specifying the path to ATL08 file
+ atl08_path <- system.file("extdata",
+   "atl08_clip.h5",
+   package = "ICESat2VegR"
+ )
+ 
+ # Reading ATL03 data (h5 file)
+ atl03_h5 <- ATL03_read(atl03_path = atl03_path)
+ 
+ # Reading ATL08 data (h5 file)
+ atl08_h5 <- ATL08_read(atl08_path = atl08_path)
+ 
+ # # Extracting ATL03 and ATL08 photons and heights
+ atl03_atl08_dt <- ATL03_ATL08_photons_attributes_dt_join(atl03_h5, atl08_h5)
+ head(atl03_atl08_dt)
+ 
+ close(atl03_h5)
+ close(atl08_h5)
+ 
+ }
Error in self$h5$ls() : HDF5-API Errors:
    error #000: ../../src/hdf5-1.14.5/src/H5Ldeprec.c in H5Literate1(): line 166: invalid location identifier
        class: HDF5
        major: Invalid arguments to routine
        minor: Inappropriate type

    error #001: ../../src/hdf5-1.14.5/src/H5VLint.c in H5VL_vol_object(): line 1748: invalid identifier
        class: HDF5
        major: Invalid arguments to routine
        minor: Inappropriate type
Calls: ATL08_read ... <Anonymous> -> initialize -> <Anonymous> -> <Anonymous> -> .Call
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/6s] OK
  Running ‘testthat.R’ [6s/6s]
* checking PDF version of manual ... [6s/6s] OK
* DONE
Status: 1 ERROR
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 2:03