* installing *source* package ‘GAGAs’ ...
** this is package ‘GAGAs’ version ‘0.6.2’
** package ‘GAGAs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c LM_GAGA.cpp -o LM_GAGA.o
LM_GAGA.cpp:22:10: warning: variable 'tmp1' set but not used [-Wunused-but-set-variable]
  double tmp1;
         ^
LM_GAGA.cpp:310:9: warning: unused variable 'N_R' [-Wunused-variable]
    int N_R = R.rows();
        ^
LM_GAGA.cpp:311:9: warning: unused variable 'P_R' [-Wunused-variable]
    int P_R = R.cols();
        ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c cox_GAGA.cpp -o cox_GAGA.o
cox_GAGA.cpp:319:7: warning: unused variable 'n' [-Wunused-variable]
  int n = X.rows();
      ^
cox_GAGA.cpp:324:10: warning: variable 'v' set but not used [-Wunused-but-set-variable]
  double v;
         ^
cox_GAGA.cpp:375:10: warning: unused variable 'eps' [-Wunused-variable]
  double eps = 1.e-19;
         ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c helper_function.cpp -o helper_function.o
helper_function.cpp:52:3: warning: unused label 'goto30' [-Wunused-label]
  goto30:
  ^~~~~~~
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c logistic_GAGA.cpp -o logistic_GAGA.o
logistic_GAGA.cpp:86:7: warning: unused variable 'n' [-Wunused-variable]
  int n = X.rows();
      ^
logistic_GAGA.cpp:153:10: warning: unused variable 'eps' [-Wunused-variable]
  double eps = 1.e-19;
         ^
logistic_GAGA.cpp:154:7: warning: unused variable 'n' [-Wunused-variable]
  int n = X.rows();
      ^
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c multinomial_GAGA.cpp -o multinomial_GAGA.o
multinomial_GAGA.cpp:13:10: warning: unused variable 'eps' [-Wunused-variable]
  double eps = 2.2204e-16;
         ^
multinomial_GAGA.cpp:96:7: warning: unused variable 'N' [-Wunused-variable]
  int N = X.rows();
      ^
multinomial_GAGA.cpp:164:10: warning: unused variable 'eps' [-Wunused-variable]
  double eps = 1.e-19;
         ^
multinomial_GAGA.cpp:165:7: warning: unused variable 'N' [-Wunused-variable]
  int N = X.rows();
      ^
4 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppEigen/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c poisson_GAGA.cpp -o poisson_GAGA.o
poisson_GAGA.cpp:61:7: warning: unused variable 'n' [-Wunused-variable]
  int n = X.rows();
      ^
poisson_GAGA.cpp:127:10: warning: unused variable 'eps' [-Wunused-variable]
  double eps = 1.e-19;
         ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GAGAs.so LM_GAGA.o RcppExports.o cox_GAGA.o helper_function.o logistic_GAGA.o multinomial_GAGA.o poisson_GAGA.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/GAGAs.Rcheck/00LOCK-GAGAs/00new/GAGAs/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GAGAs)