• using R version 4.5.0 beta (2025-03-29 r88069)
  • using platform: aarch64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 14.2.0
  • running under: macOS Ventura 13.4
  • using session charset: UTF-8
  • checking for file ‘EHR/DESCRIPTION’ ... OK
  • this is package ‘EHR’ version ‘0.4-11’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘EHR’ can be installed ... [4s/5s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [0s/0s] OK
  • checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the package can be unloaded cleanly ... [0s/0s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
  • checking loading without being on the library search path ... [0s/0s] OK
  • checking whether startup messages can be suppressed ... [0s/0s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [5s/6s] OK
  • checking Rd files ... [0s/0s] NOTE checkRd: (-1) build_lastdose.Rd:10: Lost braces     10 | code{build_lastdose}: build PK oral with lastdose information        | ^ checkRd: (-1) mod-internal.Rd:18: Lost braces     18 | code{colflow_mod}: build a comparison of potentially duplicate flow data        | ^ checkRd: (-1) mod-internal.Rd:21: Lost braces     21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time        | ^ checkRd: (-1) mod-internal.Rd:23: Lost braces     23 | code{flowData_mod}: correct flow data        | ^ checkRd: (-1) mod-internal.Rd:25: Lost braces     25 | code{concData_mod}: correct concentration data        | ^ checkRd: (-1) mod-internal.Rd:27: Lost braces     27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,        | ^ checkRd: (-1) mod-internal.Rd:30: Lost braces     30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses        | ^ checkRd: (-1) mod-internal.Rd:32: Lost braces     32 | code{writeCheckData}        | ^ checkRd: (-1) mod-internal.Rd:34: Lost braces     34 | code{processErx}: prepare e-prescription data        | ^ checkRd: (-1) mod-internal.Rd:36: Lost braces     36 | code{processErxAddl}: additional processing, checking for connected observations        | ^ checkRd: (-1) mod-internal.Rd:38: Lost braces     38 | code{validateColumns}: check columns are in place        | ^ checkRd: (-1) mod-internal.Rd:40: Lost braces     40 | code{read}: generic read function        | ^ checkRd: (-1) mod-internal.Rd:42: Lost braces     42 | code{setDoseMar}: set unit/rate/date columns        | ^ checkRd: (-1) pk-internal.Rd:19: Lost braces     19 | code{takeClosest}: take value at nearest time        | ^ checkRd: (-1) pk-internal.Rd:22: Lost braces     22 | code{takeClosestTime}: find nearest time        | ^ checkRd: (-1) pk-internal.Rd:24: Lost braces     24 | code{daysDiff}: number of days between two dates        | ^ checkRd: (-1) pk-internal.Rd:26: Lost braces     26 | code{minDiff}: difference (in minutes) of time vector        | ^ checkRd: (-1) pk-internal.Rd:28: Lost braces     28 | code{fixDates}: add leading zeroes to date        | ^ checkRd: (-1) pk-internal.Rd:30: Lost braces     30 | code{joinFlowMar}: rbind two data sets        | ^ checkRd: (-1) pk-internal.Rd:32: Lost braces     32 | code{updateInterval_mod}: replace maxint with difference between surgery time        | ^ checkRd: (-1) pk-internal.Rd:35: Lost braces     35 | code{fix_serum_time}: create time variable        | ^ checkRd: (-1) pk-internal.Rd:37: Lost braces     37 | code{merge_by_time}: impute in x by closest time in y        | ^ checkRd: (-1) pk-internal.Rd:39: Lost braces     39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file        | ^ checkRd: (-1) pk-internal.Rd:41: Lost braces     41 | code{addZeroDose}: add rows of zero dose, after a gap        | ^ checkRd: (-1) pk-internal.Rd:43: Lost braces     43 | code{pkdata}        | ^
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [1s/1s] OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [7s/8s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [84s/97s] OK
  • checking PDF version of manual ... [6s/8s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '