* installing *source* package ‘BLMEngineInR’ ...
** this is package ‘BLMEngineInR’ version ‘0.1.7’
** package ‘BLMEngineInR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c AdjustForToxMode.cpp -o AdjustForToxMode.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c AdjustForWHAM.cpp -o AdjustForWHAM.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CHESS.cpp -o CHESS.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CHESSIter.cpp -o CHESSIter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcActivityCoef.cpp -o CalcActivityCoef.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcChargeBalance.cpp -o CalcChargeBalance.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcDonnanLayer.cpp -o CalcDonnanLayer.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcIonicStrength.cpp -o CalcIonicStrength.o
CalcIonicStrength.cpp:49:10: warning: variable 'ExcludedIS' set but not used [-Wunused-but-set-variable]
double ExcludedIS = 0.0;
^
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcIonicStrengthEffects.cpp -o CalcIonicStrengthEffects.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcIterationTotalMoles.cpp -o CalcIterationTotalMoles.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcIterationTotals.cpp -o CalcIterationTotals.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcResidAndError.cpp -o CalcResidAndError.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcSpecConc.cpp -o CalcSpecConc.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcStep.cpp -o CalcStep.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CalcWHAMSpecCharge.cpp -o CalcWHAMSpecCharge.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c CompUpdate.cpp -o CompUpdate.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c InitialGuess.cpp -o InitialGuess.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c Jacobian.cpp -o Jacobian.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c MaxCompError.cpp -o MaxCompError.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c RcppArmaHelper.cpp -o RcppArmaHelper.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c SimpleAdjustComp.cpp -o SimpleAdjustComp.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c TempCorrection.cpp -o TempCorrection.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.5/RcppArmadillo/include' -I/opt/R/arm64/include -DARMA_USE_LEGACY -fPIC -falign-functions=64 -Wall -g -O2 -c UpdateFixedComps.cpp -o UpdateFixedComps.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BLMEngineInR.so AdjustForToxMode.o AdjustForWHAM.o CHESS.o CHESSIter.o CalcActivityCoef.o CalcChargeBalance.o CalcDonnanLayer.o CalcIonicStrength.o CalcIonicStrengthEffects.o CalcIterationTotalMoles.o CalcIterationTotals.o CalcResidAndError.o CalcSpecConc.o CalcStep.o CalcWHAMSpecCharge.o CompUpdate.o InitialGuess.o Jacobian.o MaxCompError.o RcppArmaHelper.o RcppExports.o SimpleAdjustComp.o TempCorrection.o UpdateFixedComps.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
ld: warning: could not create compact unwind for _allocate_tramp_ctrl: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_created: does not use standard frame
ld: warning: could not create compact unwind for ___gcc_nested_func_ptr_deleted: does not use standard frame
ld: warning: could not create compact unwind for ___emutls_get_address: does not use standard frame
installing to /Volumes/Builds/packages/big-sur-arm64/results/4.5/BLMEngineInR.Rcheck/00LOCK-BLMEngineInR/00new/BLMEngineInR/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BLMEngineInR)