* installing *source* package ‘APML0’ ... ** this is package ‘APML0’ version ‘0.11’ ** package ‘APML0’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.3.19.1)’ using SDK: ‘MacOSX14.5.sdk’ clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c APML0.cpp -o APML0.o clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/Rcpp/include' -I'/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o In file included from APML0.cpp:In file included from RcppExports.cpp:43: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] : In file included from ./../inst/include/APML0.h:7: In file included from ./../inst/include/APML0_RcppExports.h:7: In file included from 273 | /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: Index count In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:26= 0; : In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] | ^ 273 | Index count = 0; | ^ In file included from APML0.cppIn file included from RcppExports.cpp:4: In file included from ./../inst/include/APML0.h:7: In file included from ./../inst/include/APML0_RcppExports.h:3: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29: :7: In file included from In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: : warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_ 78 | Index et_post = 0; //nsupe Number of r_et_post = 0;relaxed snodes in po // Number of relstoaxed snodesrdere id etree | ^ n/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79: postord9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0;ered // Number of relaxed snodeetrees in th | ^ /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] e original etree | ^ 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:4: In file included from ./../inst/include/APML0.h:7: In file included from ./../inst/include/APML0_RcppExports.h:7In file included from APML0.cpp:3: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: : In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index 72 | Index replacem replacements = 0; ents = 0; | ^ | ^ In file included from APML0.cpp:3: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45: In file included from RcppExports.cpp/Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] :4: In file included from ./../inst/include/APML0.h:7 246 | int count = : In file included from ./../inst/include/APML0_RcppExports.h:7: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/RcppEigenForward.h:37: 0; | ^ In file included from /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/sonoma-arm64/Rlib/4.6/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ APML0.cpp:240:14: warning: unused variable 'ia' [-Wunused-variable] 240 | int i, j, ia=0; | ^~ APML0.cpp:241:16: warning: unused variable 'rss1' [-Wunused-variable] 241 | double rss0, rss1, RSS0; | ^~~~ APML0.cpp:243:14: warning: unused variable 'dbMax' [-Wunused-variable] 243 | double xr, dbMax; | ^~~~~ APML0.cpp:303:24: warning: unused variable 'iadd' [-Wunused-variable] 303 | int i, j, it=0, il, iadd, ia=0; | ^~~~ APML0.cpp:304:29: warning: variable 'rss1' set but not used [-Wunused-but-set-variable] 304 | double zi, b0, db0, rss0, rss1, RSS0; | ^ APML0.cpp:305:10: warning: unused variable 'lambdaMax' [-Wunused-variable] 305 | double lambdaMax; | ^~~~~~~~~ APML0.cpp:336:5: warning: unused label 'local' [-Wunused-label] 336 | local: | ^~~~~~ APML0.cpp:398:29: warning: variable 'rss1' set but not used [-Wunused-but-set-variable] 398 | double zi, b0, db0, rss0, rss1, RSS0; | ^ APML0.cpp:544:10: warning: unused variable 'lambda2i' [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~~~~ APML0.cpp:544:24: warning: unused variable 'obj0' [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~ APML0.cpp:544:30: warning: unused variable 'obj1' [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~ APML0.cpp:544:42: warning: variable 'rss1' set but not used [-Wunused-but-set-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^ APML0.cpp:544:57: warning: unused variable 'objQi' [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~ APML0.cpp:544:64: warning: unused variable 'objQj' [-Wunused-variable] 544 | double lambda2i, zi, obj0, obj1, rss0, rss1, b0, db0, objQi, objQj, RSS0; | ^~~~~ APML0.cpp:687:19: warning: unused variable 'objQi' [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:687:30: warning: unused variable 'objQj' [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:687:37: warning: unused variable 'obj0' [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:687:43: warning: unused variable 'obj1' [-Wunused-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:687:55: warning: variable 'rss1' set but not used [-Wunused-but-set-variable] 687 | double zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^ APML0.cpp:842:10: warning: unused variable 'lambda2i' [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~~~~ APML0.cpp:842:29: warning: unused variable 'objQi' [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:842:40: warning: unused variable 'objQj' [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~~ APML0.cpp:842:47: warning: unused variable 'obj0' [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:842:53: warning: unused variable 'obj1' [-Wunused-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^~~~ APML0.cpp:842:65: warning: variable 'rss1' set but not used [-Wunused-but-set-variable] 842 | double lambda2i, zi, zi2, objQi=0.0, objQj, obj0, obj1, rss0, rss1, b0, db0, RSS0; | ^ 5 warnings generated. 30 warnings generated. clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o APML0.so APML0.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/sonoma-arm64/results/4.6/APML0.Rcheck/00LOCK-APML0/00new/APML0/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (APML0)