• using R version 4.6.1 (2026-06-24)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-2) 16.1.0     GNU Fortran (Debian 16.1.0-2) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-18 22:06:56 UTC
• checking for file ‘viewpoly/DESCRIPTION’ ... OK
• this is package ‘viewpoly’ version ‘1.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘viewpoly’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [30s/39s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... NONE
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [10s/14s] ERROR   Running ‘testthat.R’ [10s/13s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(vdiffr)   > library(viewpoly)   >   > test_check("viewpoly")   Saving _problems/test-golem-recommended-2.R   [ FAIL 1 | WARN 2 | SKIP 6 | PASS 58 ]      ══ Skipped tests (6) ═══════════════════════════════════════════════════════════   • On CRAN (6): 'test-MAPpoly.R:3:3', 'test-QTLpoly.R:3:3', 'test-diaQTL.R:3:3',     'test-golem-recommended.R:23:5', 'test-polymapR.R:3:3', 'test-polyqtlR.R:3:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-golem-recommended.R:2:3'): app ui ──────────────────────────────   Error in `file(con, "w")`: cannot open the connection   Backtrace:        ▆     1. └─viewpoly:::app_ui() at test-golem-recommended.R:2:3     2. ├─htmltools::tagList(...)     3. │ └─rlang::dots_list(...)     4. ├─bs4Dash::bs4DashPage(...)     5. │ └─bs4Dash:::tagAssert(body, type = "div", class = "content-wrapper")     6. ├─bs4Dash::dashboardBody(...)     7. │ ├─shiny::tags$div(...)     8. │ │ └─rlang::dots_list(...)     9. │ └─shiny::tags$section(class = "content", ...)    10. │ └─rlang::dots_list(...)    11. ├─bs4Dash::tabItems(...)    12. ├─bs4Dash::tabItem(tabName = "help", mod_help_ui("help_1"))    13. │ └─shiny::tags$div(...)    14. │ └─rlang::dots_list(...)    15. └─viewpoly:::mod_help_ui("help_1")    16. ├─htmltools::tagList(...)    17. │ └─rlang::dots_list(...)    18. ├─shiny::fluidPage(...)    19. │ ├─shiny::bootstrapPage(...)    20. │ │ └─rlang::list2(...)    21. │ └─htmltools::div(class = "container-fluid", ...)    22. │ └─rlang::dots_list(...)    23. ├─shiny::column(...)    24. │ └─htmltools::div(class = colClass, ...)    25. │ └─rlang::dots_list(...)    26. ├─bs4Dash::box(...)    27. │ └─shiny::tags$div(class = "card-body", style = style, ..., sidebar[[2]])    28. │ └─rlang::dots_list(...)    29. ├─shiny::tabsetPanel(...)    30. │ ├─shiny:::remove_first_class(...)    31. │ └─bslib (local) func(..., id = id, selected = selected, header = header, footer = footer)    32. │ └─bslib (local) new(...)    33. │ └─bslib:::tabsetPanel_(...)    34. │ └─bslib:::buildTabset(...)    35. │ ├─bslib:::dropNulls(list2(...))    36. │ └─rlang::list2(...)    37. ├─shiny::tabPanel(...)    38. │ └─bslib::nav(title, ..., value = value, icon = icon)    39. │ └─bslib (local) new(...)    40. │ └─bslib:::tabPanel_(title, ..., value = value, icon = icon)    41. │ └─htmltools::div(...)    42. │ └─rlang::dots_list(...)    43. └─htmltools::includeMarkdown(...)    44. └─markdown::mark(path, output = NULL)    45. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)    46. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    47. └─base::file(con, "w")      [ FAIL 1 | WARN 2 | SKIP 6 | PASS 58 ]   Deleting unused snapshots: 'tetra_example/effects-bar.svg',   'tetra_example/effects-circle.svg', 'tetra_example/effects-digenic.svg',   'tetra_example/linkage-map-draw-names.svg',   'tetra_example/linkage-map-draw.svg', 'tetra_example/plot-map-list.svg', and   'tetra_example/qtl-plot.svg'   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR