* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘stringfish’ ...
** this is package ‘stringfish’ version ‘0.19.0’
** package ‘stringfish’ successfully unpacked and MD5 sums checked
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
stringfish configure script
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++-16 -std=gnu++20 accepts -g... yes
checking for g++-16 -std=gnu++20 option to enable C++11 features... -std=gnu++11
C++ compiler: g++-16 -std=gnu++20
R 4.6.0 detected -- using R default C++ standard
PCRE2 10.46 library detected -- skipping PCRE2 compilation
-lpcre2-8


configure: creating ./config.status
config.status: creating src/Makevars
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeQLBX5/R.INSTALL7a9d770490363/stringfish/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sf_functions.cpp -o sf_functions.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:37,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/tbb/concurrent_unordered_set.h:23,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/TBB.h:11,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:24,
                 from sf_functions.cpp:4:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/../atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb_thread.h:251:29:   required from here
  251 |             return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id);
      |                    ~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include/tbb/internal/../atomic.h:551:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic<long unsigned int>&’ does not use ‘constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)’ [-Wcast-user-defined]
  551 |     return (atomic<T>&)t;
      |            ^~~~~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H  -I.   -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o
ar rcs libSFPCRE2.a  PCRE2_wrapper/pcre2_wrapper.o
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2 -lpcre2-8 -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeQLBX5/R.INSTALL7a9d770490363/stringfish/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeQLBX5/R.INSTALL7a9d770490363/stringfish/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeQLBX5/R.INSTALL7a9d770490363/stringfish/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-stringfish/00new/stringfish/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stringfish)