* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘rxode2parse’ ...
** package ‘rxode2parse’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include
RCPP=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include
EG=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include
SH=-isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/' -Wl,-rpath,'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/' -ltbb -ltbbmalloc
# Release options
PKG_CFLAGS = -D_isrxode2parse_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)"
--------[end src/Makevars]--------
--------[begin R/RxODE_md5.R]--------
rxode2parse.md5 <- "c18ff1a2f151e2d8b856bbe21daf2be7"
--------[end R/RxODE_md5.R]--------
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpJM8VXw/R.INSTALL1afe5a65779c80/rxode2parse/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c codegen.c -o codegen.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c etTran.cpp -o etTran.o
etTran.cpp: In function ‘Rcpp::List etTransParse(Rcpp::List, Rcpp::List, bool, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<10, Rcpp::PreserveStorage> >, Rcpp::CharacterVector, bool, bool, bool)’:
etTran.cpp:2274:32: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2274 | id.size() > (idxOut = idxOutput[iCur]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2277:38: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2277 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2285:39: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2285 | idxOutput.size() < iCur+1 &&
| ~~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2286:32: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2286 | id.size() > (idxOut = idxOutput[iCur+1]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2289:38: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2289 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_factor.cpp -o fast_factor.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c genModelVars.c -o genModelVars.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getOption.c -o getOption.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lincmt.c -o lincmt.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c lincmtB.cpp -o lincmtB.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun.hpp:201,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:10,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math.hpp:19,
from lincmtB.cpp:108:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector<int>&, const int&, const int&, const int&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
73 | for (std::size_t i = 0; i < p - 1; i++) {
| ~~^~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
79 | } while (k < x);
| ~~^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
105 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector<bool>&, const int&, const double&, const std::vector<int>&, std::vector<double, std::allocator<double> >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
126 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
132 | while ((first_zero < index.size()) && index[first_zero]) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
135 | if (first_zero == index.size()) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
143 | for (std::size_t i = 0; i != first_zero + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_lccdf.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_ccdf_log.hpp:4,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob.hpp:356,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:16,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:14:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp: In function ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::von_mises_cdf(const T_x&, const T_mu&, const T_k&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
194 | if (cdf_n < 0.0)
|
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/von_mises_cdf.hpp:194: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory
In file included from lincmtB.cpp:187:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223: warning: unused variable ‘curEvid’ [-Wunused-variable]
223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
|
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err.hpp:4,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/profiling.hpp:9,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:53,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:8:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime)>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381:
../inst/include/rxode2parseGetTime.h:314: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
314 | if (infBidx == -1) return 0.0;
|
../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’:
../inst/include/rxode2parseGetTime.h:312: note: ‘infBidx’ was declared here
312 | int infBidx;
|
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_division.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_divide_equal.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:29:
In constructor ‘stan::math::internal::multiply_vd_vari::multiply_vd_vari(stan::math::vari*, double)’,
inlined from ‘stan::math::var_value<T>& stan::math::var_value<T, typename std::enable_if<std::is_floating_point<typename std::decay<_Tp>::type>::value, void>::type>::operator*=(T) [with T = double]’ at /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:24:9,
inlined from ‘stan::math::var_value<T>& stan::math::var_value<T, typename std::enable_if<std::is_floating_point<typename std::decay<_Tp>::type>::value, void>::type>::operator*=(T) [with T = double]’ at /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiply_equal.hpp:19:22,
inlined from ‘Eigen::Matrix<Type, -1, -1> stan::math::genericCmtInterface(Eigen::Matrix<Type, -1, 1>&, const Eigen::Matrix<double, -1, 1>&, double, int, int, int, int, int, int, rx_solving_options_ind*, rx_solve*, const Eigen::Matrix<double, -1, -1>&, const Eigen::Matrix<double, -1, -1>&) [with T = var_value<double>]’ at lincmtB.cpp:2517,
inlined from ‘Eigen::Matrix<Type, -1, 1> stan::math::linCmtFun::operator()(Eigen::Matrix<Type, -1, 1>&) const [with T = stan::math::var_value<double>]’ at lincmtB.cpp:2589,
inlined from ‘void stan::math::jacobian(const F&, const Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, -1>&) [with F = linCmtFun]’ at /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/functor/jacobian.hpp:23:27:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/operator_multiplication.hpp:34:75: warning: ‘amt’ may be used uninitialized [-Wmaybe-uninitialized]
34 | multiply_vd_vari(vari* avi, double b) : op_vd_vari(avi->val_ * b, avi, b) {}
| ^
lincmtB.cpp: In function ‘void stan::math::jacobian(const F&, const Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, 1>&, Eigen::Matrix<double, -1, -1>&) [with F = linCmtFun]’:
lincmtB.cpp:2266: note: ‘amt’ was declared here
2266 | double amt;
|
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parseLinCmt.c -o parseLinCmt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print_node.c -o print_node.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c qs.cpp -o qs.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sbuf.c -o sbuf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmpi.c -o strncmpi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tran.c -o tran.o
In file included from parseFuns.h:131,
from tran.c:140:
parseFunsDosing.h: In function ‘handleFunctionTad’:
parseFunsDosing.h:82:61: warning: value computed is not used [-Wunused-value]
82 | handleFunctionTadEmptyCcode(tf, v2) ||
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2parse_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c udf.cpp -o udf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2parse_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilc.c -o utilc.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o rxode2parse.so RcppExports.o codegen.o etTran.o fast_factor.o genModelVars.o getOption.o init.o lincmt.o lincmtB.o parseLinCmt.o print_node.o qs.o sbuf.o strncmpi.o tran.o udf.o utilc.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJM8VXw/R.INSTALL1afe5a65779c80/rxode2parse/src'
make[1]: Entering directory '/tmp/RtmpJM8VXw/R.INSTALL1afe5a65779c80/rxode2parse/src'
make[1]: Leaving directory '/tmp/RtmpJM8VXw/R.INSTALL1afe5a65779c80/rxode2parse/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-rxode2parse/00new/rxode2parse/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2parse)