* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘rxode2’ ...
** package ‘rxode2’ successfully unpacked and MD5 sums checked
** using staged installation
R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## This is only for rxode2
> for (f in c("inst/include/rxode2_RcppExports.h", "src/RcppExports.cpp")) {
+ l <- readLines(f)
+ w <- which(regexpr("^[#]include <RcppArmadillo.h>", l) != -1)
+ if (length(w) > 0) {
+ l <- l[-w]
+ }
+ w <- which(regexpr("^[#]define R_STRICT_HEADERS", l) != -1)
+ if (length(w) > 0) {
+ l <- l[-w]
+ }
+ l <- c("#define R_STRICT_HEADERS",
+ "#include <RcppArmadillo.h>",
+ l)
+ file.out <- file(f, "wb")
+ writeLines(l, file.out)
+ close(file.out)
+ }
>
> l <- readLines("R/RcppExports.R")
> w <- which(regexpr("# Register entry points", l, fixed=TRUE) != -1)
> if (length(w) >= 1) {
+ w <- w[1]
+ l <- l[seq(1, w-1)]
+ RcppExports.R <- file("R/RcppExports.R", "wb")
+ writeLines(l, RcppExports.R)
+ close(RcppExports.R)
+ }
>
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> .in <- gsub("@ARMA@", file.path(find.package("RcppArmadillo"),"include"), .in)
> .in <- gsub("@BH@", file.path(find.package("BH"),"include"), .in)
> .in <- gsub("@RCPP@", file.path(find.package("Rcpp"),"include"), .in)
> .in <- gsub("@EG@", file.path(find.package("RcppEigen"),"include"), .in)
>
> .in <- gsub("@SL@", paste(capture.output(StanHeaders:::LdFlags()), capture.output(RcppParallel:::RcppParallelLibs())), #nolint
+ .in)
>
>
> .badStan <- ""
> .in <- gsub("@SH@", gsub("-I", "-@ISYSTEM@",
+ paste(capture.output(StanHeaders:::CxxFlags()), # nolint
+ capture.output(RcppParallel:::CxxFlags()), # nolint
+ paste0("-@ISYSTEM@'", system.file('include', 'src', package = 'StanHeaders', mustWork = TRUE), "'"),
+ .badStan)),
+ .in)
>
>
>
>
> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) {
+ .in <- gsub("@CXX14STD@", "-std=c++1y", .in)
+ file.out <- file("src/Makevars.win", "wb")
+ writeLines(gsub("@ISYSTEM@", "I", .in),
+ file.out)
+ close(file.out)
+ } else {
+ .in <- gsub("@CXX14STD@", "-std=gnu++14", .in)
+ file.out <- file("src/Makevars", "wb")
+ writeLines(gsub("@ISYSTEM@", "isystem", .in),
+ file.out)
+ close(file.out)
+ }
>
> if (file.exists("man/reexports.Rd")) {
+ l <- readLines("man/reexports.Rd")
+ if (!any(regexpr("[\\]value", l) != -1)) {
+ l <- c(l, "\\value{ Inherited from parent routine }")
+ file.out <- file("man/reexports.Rd", "wb")
+ writeLines(l, file.out)
+ close(file.out)
+ }
+ }
>
>
> unlink("R/rxode2_md5.R")
>
> cpp <- list.files("src", pattern = ".(c|h|cpp|f)$")
> include <- list.files("inst/include")
> #Rfiles <- list.files("R/", pattern = ".R")
>
> cmd <- file.path(R.home("bin"), "R")
> args <- c("CMD", "config")
>
> md5 <- digest::digest(c(lapply(c(paste0("src/", cpp),
+ paste0("inst/include/", include)#,
+ #paste0("R/", Rfiles)
+ ), digest::digest, file = TRUE),
+ ## vapply(c("BLAS_LIBS", "CC", "CFLAGS", "CPICFLAGS",
+ ## "CXX", "CXXFLAGS", "CXXPICFLAGS",
+ ## "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS",
+ ## "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS",
+ ## "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS",
+ ## "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS",
+ ## "FC", "FFLAGS", "FCFLAGS", "FPICFLAGS"),
+ ## function(cfg) {
+ ## rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout)
+ ## }, character(1)
+ ## ),
+ ""
+ ))
> unlink("R/rxode2_md5.R")
> md5file <- file("R/rxode2_md5.R", "wb")
> writeLines(sprintf("rxode2.md5 <- \"%s\"\n", md5), md5file)
> close(md5file)
>
> l <- readLines("DESCRIPTION")
> w <- which(regexpr("Version[:] *(.*)$", l) != -1)
> v <- gsub("Version[:] *(.*)$", "\\1", l[w])
>
> unlink("inst/include/rxode2parseVer.h")
> ode.h <- file("inst/include/rxode2parseVer.h", "wb")
> writeLines(c(sprintf("#define __VER_md5__ \"%s\"", md5),
+ "#define __VER_repo__ \"https://github.com/nlmixr2/rxode2\"",
+ sprintf("#define __VER_ver__ \"%s\"", v)),
+ ode.h)
> close(ode.h)
>
> unlink("src/sbuf.c")
> l <- readLines("inst/include/sbuf.c")
> sbuf.c <- file("src/sbuf.c", "wb")
> writeLines(l, sbuf.c)
> close(sbuf.c)
>
>
> unlink("src/codegen2.h")
> l <- readLines("inst/include/rxode2_model_shared.c")
>
> l <- l[l != ""]
> l <- gsub(" *= *NULL;", "=NULL;", l)
>
> def <- l
> w <- which(regexpr("double _prod", def) != -1) - 1
> def <- def[1:w]
> def <- gsub("=NULL", "", def)
> def <- gsub("[^ ]* *[*]?([^;]*);", "\\1", def)
>
> def <- unique(c(def, c("_sum", "_udf", "_sign", "_prod", "_max", "_min", "_transit4P", "_transit3P", "_assignFuns0", "_assignFuns", "_getRxSolve_", "_solveData", "_rxord", "__assignFuns2")))
>
> w0 <- which(grepl("double +_prod", l))[1]
> r <- 1:(w0 - 1)
> l0 <- l[r]
> l <- l[-r]
>
>
> w1 <- which(regexpr("dynamic start", l) != -1)
> l1 <- l[1:w1]
>
>
>
> w2 <- which(regexpr("dynamic stop", l) != -1)
> l2 <- l[seq(w2, length(l))]
>
> w3 <- which(regexpr("assign start", l2) != -1)
>
> l3 <- l2[seq(w3, length(l2))]
> l2 <- l2[1:w3]
>
> w4 <- which(regexpr("assign stop", l3) != -1)
> l3 <- l3[seq(w4, length(l3))]
>
> dfP <- l[seq(w1+1, w2-1)]
>
> dfP <- dfP[regexpr("^ *$", dfP)==-1]
> df <- setNames(do.call("rbind",lapply(seq_along(dfP),
+ function(i) {
+ .r <- sub("^ *", "", dfP[[i]])
+ .r <- sub("^([^ ]*) *= *[(]", "\\1,", .r)
+ .r <- sub("^([^ ]*) *[)] *R_GetCCallable *[(] *\"", "\\1,", .r, perl=TRUE)
+ .r <- sub("^([^ ]*) *\" *, *\"", "\\1,", .r, perl=TRUE)
+ .r <- sub("^([^ ]*)\" *[)] *; *", "\\1",.r, perl=TRUE)
+ data.frame(t(strsplit(.r, ",")[[1]]),stringsAsFactors = FALSE)
+ })), c("fun", "type", "package", "packageFun"))
>
> df$rxFun <- df$fun
> df$argMax <- df$argMin <- NA_integer_
> df$threadSafe <- 1L
> df <- df[,c("rxFun", "fun", "type", "package", "packageFun", "argMin", "argMax", "threadSafe")]
> df$rxFun <- gsub("_llik", "llik", df$rxFun)
>
> def <- def[!(def %in% df$rxFun)]
> def <- def[!(def %in% df$fun)]
>
> .parseEnv <- new.env(parent=emptyenv())
> source("R/parseFuns.R")
>
> df$argMin <- vapply(df$rxFun, function(f) {
+ .n <- .parseEnv$.parseNum[f]
+ if (is.na(.n)) return(NA_integer_)
+ .n <-setNames(.n, NULL)
+ as.integer(.n)
+ }, integer(1), USE.NAMES=TRUE)
>
> df$argMax <- df$argMin
>
> dfStr <- deparse(df)
> dfStr[1] <- paste(".parseEnv$.rxode2parseDf <- ", dfStr[1])
>
> dfIni.R <- file("R/dfIni.R", "wb")
> writeLines(dfStr,
+ dfIni.R)
> close(dfIni.R)
>
> ## deparse1 came from R 4.0, use deparse2
> deparse2 <- function(expr, collapse = " ", width.cutoff = 500L, ...) {
+ paste(deparse(expr, width.cutoff, ...), collapse = collapse)
+ }
>
> final <- c("#include <time.h>",
+ "#include <stdlib.h>",
+ "unsigned long int __timeId=0;",
+ "void writeHeader(const char *md5, const char *extra) {",
+ paste0("sAppend(&sbOut, \"#define ", def, " _rx%s%s%ld\\n\", extra, md5, __timeId++);"),
+ "}",
+ "void writeBody0(void) {",
+ paste0("sAppendN(&sbOut, ", vapply(paste0(l0, "\n"), deparse2, character(1)), ", ", nchar(l0) + 1, ");"),
+ "}",
+ "void writeBody1(void) {",
+ paste0("sAppendN(&sbOut, ", vapply(paste0(l1, "\n"), deparse2, character(1)), ", ", nchar(l1) + 1, ");"),
+ "}",
+ "void writeBody2(void) {",
+ paste0("sAppendN(&sbOut, ", vapply(paste0(l2, "\n"), deparse2, character(1)), ", ", nchar(l2) + 1, ");"),
+ "}",
+ "void writeBody3(void) {",
+ paste0("sAppendN(&sbOut, ", vapply(paste0(l3, "\n"), deparse2, character(1)), ", ", nchar(l3) + 1, ");"),
+ "}",
+ "void writeFooter(void) {",
+ paste0("sAppendN(&sbOut, \"#undef ", def, "\\n\", ", nchar(def) + 8, ");"),
+ "}"
+ )
>
> codegen2.h <- file("src/codegen2.h", "wb")
> writeLines(final,
+ codegen2.h)
> close(codegen2.h)
>
> proc.time()
user system elapsed
0.230 0.037 0.258
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include
RCPP=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include
EG=/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include
SH=-isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) -L'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/' -Wl,-rpath,'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/' -ltbb -ltbbmalloc
# Release options
PKG_CFLAGS = -D_isrxode2_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"$(BH)" -isystem"$(EG)" $(SH) -isystem"$(RCPP)"
--------[end src/Makevars]--------
--------[begin R/RxODE_md5.R]--------
rxode2.md5 <- "81d3f05c9cb380efff615aa6e88cf4c4"
--------[end R/RxODE_md5.R]--------
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7THXxq/R.INSTALL2bc32d8ce89e/rxode2/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c approx.c -o approx.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c boost.cpp -o boost.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c box.c -o box.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c call_dvode.c -o call_dvode.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c cbindThetaOmega.cpp -o cbindThetaOmega.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cfode.c -o cfode.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cfode_static.c -o cfode_static.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c checkmate.cpp -o checkmate.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c checkmate_stub.c -o checkmate_stub.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c codegen.c -o codegen.o
codegen.c: In function ‘codegen’:
codegen.c:344:19: warning: unused variable ‘assignOne’ [-Wunused-variable]
344 | int assignOne = 0;
| ^~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c corfailure.c -o corfailure.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c correction.c -o correction.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c cvPost.cpp -o cvPost.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c daxpy.c -o daxpy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ddot.c -o ddot.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dgefa.c -o dgefa.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dgesl.c -o dgesl.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c dgpadm.f -o dgpadm.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c dlsoda.f -o dlsoda.o
dlsoda.f:2536:72:
2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
| ^
Warning: ‘ml’ may be used uninitialized [-Wmaybe-uninitialized]
dlsoda.f:2407:32:
2407 | 1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
| ^
note: ‘ml’ was declared here
dlsoda.f:2536:72:
2536 | IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
| ^
Warning: ‘mu’ may be used uninitialized [-Wmaybe-uninitialized]
dlsoda.f:2407:42:
2407 | 1 LENIW, LENRW, LENWM, ML, MORD, MU, MXHNL0, MXSTP0
| ^
note: ‘mu’ was declared here
dlsoda.f:2615:29:
2615 | IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0)
| ^
Warning: ‘h0’ may be used uninitialized [-Wmaybe-uninitialized]
dlsoda.f:2412:48:
2412 | DOUBLE PRECISION ATOLI, AYI, BIG, EWTI, H0, HMAX, HMX, RH, RTOLI,
| ^
note: ‘h0’ was declared here
dlsoda.f:2851:72:
2851 | IHIT = ABS(TN - TCRIT) .LE. 100.0D0*UROUND*HMX
| ^
Warning: ‘tcrit’ may be used uninitialized [-Wmaybe-uninitialized]
dlsoda.f:2413:14:
2413 | 1 TCRIT, TDIST, TNEXT, TOL, TOLSF, TP, SIZE, SUM, W0
| ^
note: ‘tcrit’ was declared here
dlsoda.f:2874:10:
2874 | IF (IHIT) T = TCRIT
| ^
Warning: ‘ihit’ may be used uninitialized [-Wmaybe-uninitialized]
dlsoda.f:2415:18:
2415 | LOGICAL IHIT
| ^
note: ‘ihit’ was declared here
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dop853.c -o dop853.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dscal.c -o dscal.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c dsphiv.f -o dsphiv.o
dsphiv.f:270:72:
270 | wsp(iphih+mbrkdwn+1) = hj1j*wsp(iphih+2*mx+mbrkdwn-1)
| ^
Warning: ‘hj1j’ may be used uninitialized [-Wmaybe-uninitialized]
dsphiv.f:125:35:
125 | . avnorm, hj1j, hjj, SQR1
| ^
note: ‘hj1j’ was declared here
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c et.cpp -o et.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c etTran.cpp -o etTran.o
etTran.cpp: In function ‘Rcpp::List etTrans(Rcpp::List, const Rcpp::RObject&, bool, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<10, Rcpp::PreserveStorage> >, Rcpp::CharacterVector, bool, bool, bool, Rcpp::Nullable<Rcpp::Vector<19> >)’:
etTran.cpp:784:32: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
784 | if (hasCmt || covColi >= 0 && as<std::string>(lName[covColi]) != "cmt"){
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2521:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2521 | id.size() > (idxOut = idxOutput[iCur]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2524:40: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2524 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2532:41: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2532 | idxOutput.size() < iCur+1 &&
| ~~~~~~~~~~~~~~~~~^~~~~~~~
etTran.cpp:2533:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2533 | id.size() > (idxOut = idxOutput[iCur+1]) &&
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
etTran.cpp:2536:40: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2536 | idxInput.size() > idxOut &&
| ~~~~~~~~~~~~~~~~^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c expandGrid.cpp -o expandGrid.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c expm.cpp -o expm.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_factor.cpp -o fast_factor.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fnorm.c -o fnorm.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c forder.cpp -o forder.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c genModelVars.c -o genModelVars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getOption.c -o getOption.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c handle_evid.c -o handle_evid.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c idamax.c -o idamax.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c intdy.c -o intdy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c isEt.c -o isEt.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c itostr.c -o itostr.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lincmt.c -o lincmt.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c lincmtB.cpp -o lincmtB.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun.hpp:201,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:10,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math.hpp:19,
from lincmtB.cpp:64:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combination(std::vector<int>&, const int&, const int&, const int&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:73:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
73 | for (std::size_t i = 0; i < p - 1; i++) {
| ~~^~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:79:16: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
79 | } while (k < x);
| ~~^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::combos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:102:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:105:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
105 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::increment(std::vector<bool>&, const int&, const double&, const std::vector<int>&, std::vector<double, std::allocator<double> >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:126:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
126 | for (std::size_t j = 0; j != k; j++) {
| ~~^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
132 | while ((first_zero < index.size()) && index[first_zero]) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<bool>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
135 | if (first_zero == index.size()) {
| ~~~~~~~~~~~^~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:143:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
143 | for (std::size_t i = 0; i != first_zero + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp: In function ‘void stan::math::internal::signcombos(const int&, const double&, const int&, std::vector<std::vector<double, std::allocator<double> > >&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/functor/hcubature.hpp:168:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
168 | for (std::size_t i = 1; i != choose_dimk + 1; i++) {
| ~~^~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/normal_ccdf_log.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob.hpp:240,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim.hpp:16,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:14:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp: In function ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::normal_lccdf(const T_y&, const T_loc&, const T_scale&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: ‘-Wmisleading-indentation’ is disabled from this point onwards, since column-tracking was disabled due to the size of the code/headers
68 | } else if (scaled_diff > 8.25 * INV_SQRT_TWO) {
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/prob/normal_lccdf.hpp:68: note: adding ‘-flarge-source-files’ will allow for more column-tracking support, at the expense of compilation time and memory
In file included from lincmtB.cpp:108:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223: warning: unused variable ‘curEvid’ [-Wunused-variable]
223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_2F1_converges.hpp:5,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err.hpp:4,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core/profiling.hpp:9,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/core.hpp:53,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev.hpp:8:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | y, "finite");
| ~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
35 | check_finite("hypergeometric_pFq", "a", a_ref);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
148 | return hypergeometric_3F2(std::vector<Ta>(a), std::vector<Tb>(b), z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w))
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, -1, 1> >(const char*, const char*, const Eigen::Matrix<double, -1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, -1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, -1, 1>]’
28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
29 | "not nan");
| ~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, -1, 1>; Tb = Eigen::Matrix<double, -1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
39 | check_not_nan("hypergeometric_pFq", "a", a_ref);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:125:28: required from ‘auto stan::math::hypergeometric_3F2(const Ta&, const Tb&, const Tz&) [with Ta = std::vector<double, std::allocator<double> >; Tb = std::vector<double, std::allocator<double> >; Tz = double; stan::require_all_vector_t<T_y, T_high>* <anonymous> = 0; stan::require_stan_scalar_t<T2>* <anonymous> = 0]’
125 | return hypergeometric_pFq(to_vector(a), to_vector(b), z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_3F2.hpp:148:28: required from ‘auto stan::math::hypergeometric_3F2(const std::initializer_list<_Tp>&, const std::initializer_list<_Value>&, const Tz&) [with Ta = double; Tb = double; Tz = double; stan::require_all_stan_scalar_t<Ta, Tb, Tz>* <anonymous> = 0]’
148 | return hypergeometric_3F2(std::vector<Ta>(a), std::vector<Tb>(b), z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/rev/fun/inv_inc_beta.hpp:77:37: required from here
77 | + log(hypergeometric_3F2({a_val, a_val, one_m_b}, {ap1, ap1}, w))
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, -1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | y, "finite");
| ~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:35:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
35 | check_finite("hypergeometric_pFq", "a", a_ref);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
189 | return hypergeometric_pFq(a_args, b_args, z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
306 | return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
307 | precision, max_steps);
| ~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
37 | = grad_2F1<true>(a + b, 1.0, a + 1, z);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_finite<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_finite.hpp:29:20: required from ‘void stan::math::check_finite(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
29 | elementwise_check([](double x) { return std::isfinite(x); }, function, name,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
30 | y, "finite");
| ~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:36:15: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
36 | check_finite("hypergeometric_pFq", "b", b_ref);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
189 | return hypergeometric_pFq(a_args, b_args, z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
306 | return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
307 | precision, max_steps);
| ~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
37 | = grad_2F1<true>(a + b, 1.0, a + 1, z);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 2, 1> >(const char*, const char*, const Eigen::Matrix<double, 2, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 2, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 2, 1>]’
28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
29 | "not nan");
| ~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:39:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
39 | check_not_nan("hypergeometric_pFq", "a", a_ref);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
189 | return hypergeometric_pFq(a_args, b_args, z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
306 | return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
307 | precision, max_steps);
| ~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
37 | = grad_2F1<true>(a + b, 1.0, a + 1, z);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 2, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp: In instantiation of ‘void stan::math::elementwise_check(const F&, const char*, const char*, const T&, const char*, const Indexings& ...) [with F = check_not_nan<Eigen::Matrix<double, 1, 1, 0, 1, 1> >(const char*, const char*, const Eigen::Matrix<double, 1, 1, 0, 1, 1>&)::<lambda(double)>; T = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Indexings = {}; stan::require_eigen_t<T>* <anonymous> = 0; std::enable_if_t<((bool)((Eigen::internal::traits<_Rhs>::Flags & Eigen::LinearAccessBit) || T::IsVectorAtCompileTime))>* <anonymous> = 0]’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/check_not_nan.hpp:28:20: required from ‘void stan::math::check_not_nan(const char*, const char*, const T_y&) [with T_y = Eigen::Matrix<double, 1, 1, 0, 1, 1>]’
28 | elementwise_check([](double x) { return !std::isnan(x); }, function, name, y,
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
29 | "not nan");
| ~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_pFq.hpp:40:16: required from ‘stan::return_type_t<T_x, T_sigma, T_l> stan::math::hypergeometric_pFq(const Ta&, const Tb&, const Tz&) [with Ta = Eigen::Matrix<double, 2, 1>; Tb = Eigen::Matrix<double, 1, 1, 0, 1, 1>; Tz = double; stan::require_all_eigen_st<std::is_arithmetic, Ta, Tb>* <anonymous> = 0; stan::require_arithmetic_t<Tz>* <anonymous> = 0; stan::return_type_t<T_x, T_sigma, T_l> = double]’
40 | check_not_nan("hypergeometric_pFq", "b", b_ref);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/hypergeometric_2F1.hpp:189:30: required from ‘stan::return_type_t<Ta1, Ta1, Tb, Tz> stan::math::hypergeometric_2F1(const Ta1&, const Ta2&, const Tb&, const Tz&) [with Ta1 = double; Ta2 = double; Tb = double; Tz = double; ScalarT = double; OptT = boost::optional<double>; stan::require_all_arithmetic_t<Ta1, Ta2, Tb, Tz>* <anonymous> = 0; stan::return_type_t<Ta1, Ta1, Tb, Tz> = double]’
189 | return hypergeometric_pFq(a_args, b_args, z);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:190:39: required from ‘TupleT stan::math::internal::grad_2F1_impl(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool calc_a1 = true; bool calc_a2 = true; bool calc_b1 = true; bool calc_z = true; T1 = double; T2 = double; T3 = double; T_z = double; ScalarT = double; TupleT = std::tuple<double, double, double, double>]’
190 | auto hyper1 = hypergeometric_2F1(a1_euler, a2_euler, b1, z_euler);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_2F1.hpp:306:57: required from ‘auto stan::math::grad_2F1(const T1&, const T2&, const T3&, const T_z&, double, int) [with bool ReturnSameT = true; T1 = double; T2 = double; T3 = double; T_z = double; stan::require_t<std::integral_constant<bool, __v> >* <anonymous> = 0]’
306 | return internal::grad_2F1_impl<true, true, true, true>(a1, a2, b1, z,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
307 | precision, max_steps);
| ~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/fun/grad_inc_beta.hpp:37:25: required from here
37 | = grad_2F1<true>(a + b, 1.0, a + 1, z);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/stan/math/prim/err/elementwise_check.hpp:153:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Eigen::EigenBase<Eigen::Matrix<double, 1, 1, 0, 1, 1> >::Index’ {aka ‘long int’} [-Wsign-compare]
153 | for (size_t i = 0; i < x.size(); i++) {
| ~~^~~~~~~~~~
In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381:
../inst/include/rxode2parseGetTime.h:314: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
314 | if (infBidx == -1) return 0.0;
../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’:
../inst/include/rxode2parseGetTime.h:312: note: ‘infBidx’ was declared here
312 | int infBidx;
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lsoda.c -o lsoda.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c matexp.f -o matexp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matexp_HM98.c -o matexp_HM98.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c methodswitch.c -o methodswitch.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c nearPD.cpp -o nearPD.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c omegaChol.c -o omegaChol.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c opkda2.f -o opkda2.o
opkda2.f:650:28:
650 | INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET)
| ^
Warning: ‘__result_ixsav’ may be used uninitialized [-Wmaybe-uninitialized]
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c orderswitch.c -o orderswitch.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c par_solve.cpp -o par_solve.o
In file included from par_solve.cpp:15:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable]
223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
| ^~~~~~~
par_solve.cpp: In function ‘void handleSS(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)’:
par_solve.cpp:1317:39: warning: variable ‘oldI’ set but not used [-Wunused-but-set-variable]
1317 | ei=0, wh, cmt, wh100, whI, wh0, oldI,
| ^~~~
../inst/include/rxode2parseGetTime.h: In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
314 | if (infBidx == -1) return 0.0;
| ^~
../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here
312 | int infBidx;
| ^~~~~~~
par_solve.cpp: In function ‘void solveWith1Pt(int*, int*, double*, double*, double*, double, double, int, int*, int, int*, rx_solving_options*, rx_solving_options_ind*, t_update_inis, void*)’:
par_solve.cpp:708:5: warning: ‘idid’ may be used uninitialized [-Wmaybe-uninitialized]
708 | if (idid <= 0) {
| ^~
par_solve.cpp:701:7: note: ‘idid’ was declared here
701 | int idid, itol=0;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c parseLinCmt.c -o parseLinCmt.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print_node.c -o print_node.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prja.c -o prja.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c qs.cpp -o qs.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rprintf.c -o rprintf.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rx2api.c -o rx2api.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxData.cpp -o rxData.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxInv.cpp -o rxInv.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxOptRep.cpp -o rxOptRep.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxStack.cpp -o rxStack.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxode2_df.cpp -o rxode2_df.o
In file included from rxode2_df.cpp:36:
../inst/include/rxode2parseGetTime.h: In function ‘int handleInfusionStartRm(int*, int*, double*, int*, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’:
../inst/include/rxode2parseGetTime.h:223:9: warning: unused variable ‘curEvid’ [-Wunused-variable]
223 | int curEvid = getEvid(ind, ind->idose[*endIdx+1]);
| ^~~~~~~
In function ‘double handleInfusionItem(int, rx_solve*, rx_solving_options*, rx_solving_options_ind*)’,
inlined from ‘double getTime__(int, rx_solving_options_ind*, int)’ at ../inst/include/rxode2parseGetTime.h:381:34:
../inst/include/rxode2parseGetTime.h:314:5: warning: ‘infBidx’ may be used uninitialized [-Wmaybe-uninitialized]
314 | if (infBidx == -1) return 0.0;
| ^~
../inst/include/rxode2parseGetTime.h: In function ‘double getTime__(int, rx_solving_options_ind*, int)’:
../inst/include/rxode2parseGetTime.h:312:9: note: ‘infBidx’ was declared here
312 | int infBidx;
| ^~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c rxthreefry.cpp -o rxthreefry.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sbuf.c -o sbuf.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scaleh.c -o scaleh.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c seed.cpp -o seed.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c solsy.c -o solsy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stoda.c -o stoda.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strdup_printf.c -o strdup_printf.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmp.c -o strncmp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strncmpi.c -o strncmpi.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tran.c -o tran.o
In file included from parseFuns.h:151,
from tran.c:151:
parseFunsDosing.h: In function ‘handleFunctionTad’:
parseFunsDosing.h:86:61: warning: value computed is not used [-Wunused-value]
86 | handleFunctionTadEmptyCcode(tf, v2) ||
| ^~
In file included from tran.c:155:
parseAssignStr.h: In function ‘handleStrAssign’:
parseAssignStr.h:129:13: warning: unused variable ‘buf’ [-Wunused-variable]
129 | char *buf = tb.str.line[tb.id];
| ^~~
In file included from tran.c:156:
parseLevels.h: In function ‘handleLevelsStr1’:
parseLevels.h:94:11: warning: unused variable ‘n’ [-Wunused-variable]
94 | int n = get_str_assign_int(tb.id, v);
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c udf.cpp -o udf.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utilc.c -o utilc.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include" -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -isystem'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include/src' -isystem"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -fpic -g -O2 -Wall -pedantic -mtune=native -c utilcpp.cpp -o utilcpp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/lotri/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/PreciseSums/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/StanHeaders/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dparser/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -D_isrxode2_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vmnorm.c -o vmnorm.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o rxode2.so RcppExports.o approx.o boost.o box.o call_dvode.o cbindThetaOmega.o cfode.o cfode_static.o checkmate.o checkmate_stub.o codegen.o common.o corfailure.o correction.o cvPost.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o et.o etTran.o expandGrid.o expm.o fast_factor.o fnorm.o forder.o genModelVars.o getOption.o handle_evid.o idamax.o init.o intdy.o isEt.o itostr.o lincmt.o lincmtB.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o parseLinCmt.o print_node.o prja.o qs.o rprintf.o rx2api.o rxData.o rxInv.o rxOptRep.o rxStack.o rxode2_df.o rxthreefry.o sbuf.o scaleh.o seed.o solsy.o stoda.o strdup_printf.o strncmp.o strncmpi.o tran.o udf.o utilc.o utilcpp.o vmnorm.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7THXxq/R.INSTALL2bc32d8ce89e/rxode2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7THXxq/R.INSTALL2bc32d8ce89e/rxode2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7THXxq/R.INSTALL2bc32d8ce89e/rxode2/src'
installing via 'install.libs.R' to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-rxode2/00new/rxode2
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2)