* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘raybevel’ ...
** package ‘raybevel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp7O1RjF/R.INSTALL33636e5249cb55/raybevel/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCGAL_NO_GMP=1 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCGAL_NO_GMP=1 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c convert_ss_to_polygons_rcpp.cpp -o convert_ss_to_polygons_rcpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCGAL_NO_GMP=1 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c generate_offset_links_nodes_rcpp.cpp -o generate_offset_links_nodes_rcpp.o
generate_offset_links_nodes_rcpp.cpp: In function ‘Rcpp::List generate_offset_links_nodes_rcpp(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::NumericVector, bool, bool)’:
generate_offset_links_nodes_rcpp.cpp:148:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Node>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
148 | for(int ii = 0; ii < nodes.size(); ii++) {
| ~~~^~~~~~~~~~~~~~
generate_offset_links_nodes_rcpp.cpp:165:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
165 | for(size_t ii = 0; ii < offsets.size(); ++ii) {
| ~~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCGAL_NO_GMP=1 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c math.cpp -o math.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DCGAL_NO_GMP=1 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c rayskeleton.cpp -o rayskeleton.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/cstdfloat.hpp:27,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/number.hpp:12,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost_mp.h:42,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
from rayskeleton.cpp:4:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
714 | else if (x == BOOST_FLOAT128_C(0.0))
| ^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
717 | if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
| ^~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_adaptor.hpp:14,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/iterator/transform_iterator.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/iterator/transform_iterator.hpp:27,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Coercion_traits.h:28,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/number_type_basic.h:35,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/basic.h:28,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
194 | failed ************ (Pred::************
| ^~~~~~~~~~~~~~~~~~~
| -
195 | assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
196 | );
| ~
| -
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| -
200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
201 | );
| ~
| -
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/property_map/property_map.hpp:598,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/graph/properties.hpp:19,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS.h:26,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS_default.h:15,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/HalfedgeDS_default.h:23,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Straight_skeleton_2.h:18,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:18,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_from_polygon_with_holes_2.h:17,
from rayskeleton.cpp:8:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/13/bits/std_thread.h:43,
from /usr/include/c++/13/thread:45,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/config.h:425,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/basic.h:21:
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Straight_skeleton_builder_2.h:27,
from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:19:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
75 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
65 | template<typename> class auto_ptr;
| ^~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o raybevel.so RcppExports.o convert_ss_to_polygons_rcpp.o generate_offset_links_nodes_rcpp.o math.o rayskeleton.o -latomic -lpthread -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp7O1RjF/R.INSTALL33636e5249cb55/raybevel/src'
make[1]: Entering directory '/tmp/Rtmp7O1RjF/R.INSTALL33636e5249cb55/raybevel/src'
make[1]: Leaving directory '/tmp/Rtmp7O1RjF/R.INSTALL33636e5249cb55/raybevel/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-raybevel/00new/raybevel/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘raybevel’ as ‘raybevel_0.1.3_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (raybevel)