• using R version 4.5.1 (2025-06-13)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘pvEBayes/DESCRIPTION’ ... OK
• this is package ‘pvEBayes’ version ‘0.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pvEBayes’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
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• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/9s] OK
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• checking for missing documentation entries ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
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• checking compiled code ... OK
• checking examples ... [25s/35s] OK Examples with CPU (user + system) or elapsed time > 5s                   user system elapsed eyeplot_pvEBayes 6.603 0.191 10.491 plot.pvEBayes 6.064 0.024 8.884
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [17s/25s] ERROR   Running ‘testthat.R’ [17s/24s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(pvEBayes)   >   > test_check("pvEBayes")   The alpha value selected under AIC is 0,   The alpha value selected under BIC is 0.        alpha AIC BIC num_mixture   1 0.0 1226.166 1273.831 200   2 0.1 1226.166 1273.831 200   3 0.3 1226.166 1273.831 200   4 0.5 1226.166 1273.831 200   5 0.7 1226.166 1273.831 200   6 0.9 1226.166 1273.831 200   The hyperparameters selected under AIC is (p = 120, c0 = 0.01),   The hyperparameters selected under BIC is (p = 120, c0 = 0.01).,           p c0 AIC BIC   1 40 1e-05 34.10699 34.42255   2 60 1e-05 34.90759 35.25496   3 80 1e-05 35.72419 36.10400   4 100 1e-05 37.80020 38.26246   5 120 1e-05 38.73868 39.23823   6 40 1e-04 29.66394 29.80296   7 60 1e-04 32.01391 32.24629   8 80 1e-04 33.63691 33.93376   9 100 1e-04 34.71119 35.05072   10 120 1e-04 35.61688 35.99239   11 40 1e-03 22.79611 22.66169   12 60 1e-03 26.97632 27.00808   13 80 1e-03 29.51066 29.64316   14 100 1e-03 30.55376 30.72775   15 120 1e-03 31.16307 31.36130   16 40 1e-02 24.28846 24.19956   17 60 1e-02 23.20719 23.07582   18 80 1e-02 21.68559 21.49393   19 100 1e-02 20.64329 20.41039   20 120 1e-02 19.15179 18.85971   21 40 1e-01 Inf Inf   22 60 1e-01 27.01397 27.01590   23 80 1e-01 Inf Inf   24 100 1e-01 32.28480 32.49610   25 120 1e-01 Inf Inf   [ FAIL 1 | WARN 2 | SKIP 0 | PASS 13 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-pvEBayes_object_S3_methods.R:11:3'): pvEBayes object associated functions ──   Error in `apply(., 1, max)`: dim(X) must have a positive length   Backtrace:       ▆    1. ├─pvEBayes::heatmap_pvEBayes(obj) at test-pvEBayes_object_S3_methods.R:11:3    2. │ └─... %>% order()    3. ├─base::order(.)    4. └─base::apply(., 1, max)      [ FAIL 1 | WARN 2 | SKIP 0 | PASS 13 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR