* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘plantmix’ ... ** this is package ‘plantmix’ version ‘1.0.3’ ** package ‘plantmix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init_dummy_file.cpp -o init_dummy_file.o (cd TMB; /home/hornik/tmp/R.check/r-release-gcc/Work/build/bin/Rscript \ --no-save --no-restore compile.R '') Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src/TMB' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include" -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_plantmix_TMBExports -DCPPAD_FRAMEWORK -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppEigen/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c plantmix_TMBExports.cpp -o plantmix_TMBExports.o In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/ad_fun.hpp:602, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:86, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/TMB.hpp:125, from plantmix_TMBExports.cpp:4: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector&, size_t, size_t, const Base*, const CppAD::vector&, short unsigned int&) [with Base = CppAD::AD]’: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized] 782 | code = hash_code( | ~~~~~~~~~^ 783 | op , | ~~~~~~~~~~~~~~~~~~~~~ 784 | new_arg , | ~~~~~~~~~~~~~~~~~~~~~ 785 | npar , | ~~~~~~~~~~~~~~~~~~~~~ 786 | par | ~~~ 787 | ); | ~ In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/recorder.hpp:14, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/ad.hpp:22, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/cppad.hpp:78: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = AD]’ declared here 125 | unsigned short hash_code( | ^~~~~~~~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here 715 | addr_t new_arg[2]; | ^~~~~~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp: In function ‘CppAD::addr_t CppAD::optimize::binary_match(const CppAD::vector&, size_t, size_t, const Base*, const CppAD::vector&, short unsigned int&) [with Base = double]’: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:782:25: warning: ‘new_arg’ may be used uninitialized [-Wmaybe-uninitialized] 782 | code = hash_code( | ~~~~~~~~~^ 783 | op , | ~~~~~~~~~~~~~~~~~~~~~ 784 | new_arg , | ~~~~~~~~~~~~~~~~~~~~~ 785 | npar , | ~~~~~~~~~~~~~~~~~~~~~ 786 | par | ~~~ 787 | ); | ~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/hash_code.hpp:125:16: note: by argument 2 of type ‘const CppAD::addr_t*’ {aka ‘const unsigned int*’} to ‘short unsigned int CppAD::hash_code(OpCode, const addr_t*, size_t, const Base*) [with Base = double]’ declared here 125 | unsigned short hash_code( | ^~~~~~~~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/TMB/include/cppad/local/optimize.hpp:715:23: note: ‘new_arg’ declared here 715 | addr_t new_arg[2]; | ^~~~~~~ g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o plantmix_TMBExports.so plantmix_TMBExports.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src/TMB' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src/TMB' make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src/TMB' [1] TRUE g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o plantmix.so init_dummy_file.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeVSgpM/R.INSTALL1ae546535bc7a4/plantmix/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-plantmix/00new/plantmix/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plantmix)