- using R version 4.5.2 (2025-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-10) 14.3.0
GNU Fortran (Debian 14.3.0-10) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘pdp/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘pdp’ version ‘0.8.2’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pdp’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
- used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/16s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [99s/127s] ERROR
Running ‘tinytest.R’ [99s/127s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> # Run tests in local environment
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ home <- length(unclass(packageVersion("pdp"))[[1]]) == 4
+ tinytest::test_package("pdp", at_home = home)
+ }
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 0 tests
test_cats_argument.R.......... 4 tests [0;32mOK [0m randomForest 4.7-1.2
Type rfNews() to see new features/changes/bug fixes.
test_cats_argument.R.......... 5 tests [0;32mOK [0m [0;34m0.4s [0m
test_exemplar.R............... 0 tests
test_exemplar.R............... 0 tests
test_exemplar.R............... 0 tests
test_exemplar.R............... 1 tests [0;32mOK [0m [0;36m21ms [0m
test_get_training_data.R...... 0 tests
Attaching package: 'ggplot2'
The following object is masked from 'package:randomForest':
margin
test_get_training_data.R...... 2 tests [0;32mOK [0m
test_get_training_data.R...... 5 tests [0;32mOK [0m
test_get_training_data.R...... 8 tests [0;32mOK [0m
Attaching package: 'ranger'
The following object is masked from 'package:randomForest':
importance
test_get_training_data.R...... 10 tests [0;32mOK [0m [0;34m4.8s [0m
test_pkg_C50.R................ 0 tests
test_pkg_C50.R................ 4 tests [0;32mOK [0m [0;34m0.2s [0m
test_pkg_MASS.R............... 0 tests
test_pkg_MASS.R............... 0 tests
test_pkg_MASS.R............... 8 tests [0;32mOK [0m [0;34m2.6s [0m
test_pkg_e1071.R.............. 0 tests
test_pkg_e1071.R.............. 0 tests
test_pkg_e1071.R.............. 0 tests
test_pkg_e1071.R.............. 0 tests
Attaching package: 'e1071'
The following object is masked from 'package:ggplot2':
element
test_pkg_e1071.R.............. 8 tests [0;32mOK [0m [0;34m1.6s [0m
Attaching package: 'zoo'
The following objects are masked from 'package:base':
as.Date, as.Date.numeric
test_pkg_party.R.............. 12 tests [0;32mOK [0m [0;34m1.9s [0m
test_pkg_ranger.R............. 0 tests
test_pkg_ranger.R............. 0 tests
test_pkg_ranger.R............. 0 tests [0;36m12ms [0m
test_pkg_stats.R.............. 10 tests [0;32mOK [0m [0;34m2.5s [0m
test_pkg_xgboost.R............ 0 tests
test_pkg_xgboost.R............ 0 tests
test_pkg_xgboost.R............ 0 tests
test_pkg_xgboost.R............ 0 tests
test_pkg_xgboost.R............ 0 tests
test_pkg_xgboost.R............ 0 tests Error in if (object$params$objective %in% c("reg:gamma", "reg:linear", :
argument is of length zero
Calls: <Anonymous> ... partial.default -> get_task -> get_task.xgb.Booster
In addition: Warning messages:
1: In partial.default(fit4, pred.var = "x.4", prob = TRUE, ice = TRUE, :
Centering may result in probabilities outside of [0, 1].
2: glm.fit: algorithm did not converge
3: glm.fit: fitted probabilities numerically 0 or 1 occurred
4: In partial.default(fit2_glm, pred.var = "x.3", prob = TRUE, ice = TRUE, :
Centering may result in probabilities outside of [0, 1].
5: In throw_err_or_depr_msg("Parameter(s) have been removed from this function: ", :
Parameter(s) have been removed from this function: params, save_period. This warning will become an error in a future version.
6: In throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: verbose. This warning will become an error in a future version.
7: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
8: In throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'label' has been renamed to 'y'. This warning will become an error in a future version.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/11s] OK
- checking PDF version of manual ... [5s/6s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR