* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘opencltools’ ... ** this is package ‘opencltools’ version ‘0.8.1’ ** package ‘opencltools’ successfully unpacked and MD5 sums checked ** using staged installation >> configure: R_HOME = '/home/hornik/tmp/R.check/r-release-gcc/Work/build' >> Detected RcppParallel include dir: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include >> Detected RcppParallel lib dir: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib >> RPP_INC_DIR = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' >> RPP_LIB_DIR = '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib' 🔧 EMSCRIPTEN_BUILD=NO >> OS = 'Linux' >> RPP_CPPFLAGS = '-I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' >> RPP_LDFLAGS = '-L/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib' 📚 Collecting system include directories from gcc... /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus -E -quiet -v -imultiarch x86_64-linux-gnu -D_GNU_SOURCE - -mtune=generic -march=x86-64 -fasynchronous-unwind-tables -dumpbase - /usr/include/c++/15 /usr/include/x86_64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/x86_64-linux-gnu/15/include /usr/local/include /usr/include/x86_64-linux-gnu /usr/include 🔎 Checking: /usr/libexec/gcc/x86_64-linux-gnu/15/cc1plus 🔎 Checking: -E 🔎 Checking: -quiet 🔎 Checking: -v 🔎 Checking: -imultiarch 🔎 Checking: x86_64-linux-gnu 🔎 Checking: -D_GNU_SOURCE 🔎 Checking: - 🔎 Checking: -mtune=generic 🔎 Checking: -march=x86-64 🔎 Checking: -fasynchronous-unwind-tables 🔎 Checking: -dumpbase 🔎 Checking: - 🔎 Checking: /usr/include/c++/15 🔎 Checking: /usr/include/x86_64-linux-gnu/c++/15 🔎 Checking: /usr/include/c++/15/backward 🔎 Checking: /usr/lib/gcc/x86_64-linux-gnu/15/include 🔎 Checking: /usr/local/include 🔎 Checking: /usr/include/x86_64-linux-gnu 🔎 Checking: /usr/include ✅ Found OpenCL header in: /usr/include 📚 Collecting system lib directories from gcc... /usr/local/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu /usr/lib/x86_64-linux-gnu /usr/local/lib/x86_64-linux-gnu 🔎 Checking: /usr/lib/x86_64-linux-gnu ✅ Found OpenCL library in: /usr/lib/x86_64-linux-gnu ✅ Enabling OpenCL: include directory -I/usr/include Checking for an actual OpenCL runtime platform... OpenCL runtime detected. Final OpenCL Detection: OPENCL_INCLUDE_FOUND = yes OPENCL_LIB_FOUND = yes OPENCL_FOUND = yes OPENCL_RUNTIME_FOUND = yes OpenCL headers/libs discovered OpenCL runtime probe succeeded Checking for NVIDIA GPU via nvidia-smi... ⚠️ CUDA driver library not found — GPU detection may fail. GPU detected: env: ‘/usr/bin/nvidia-smi’: No such file or directory >> FULL_CXXFLAGS = ' -I/usr/include -DUSE_OPENCL' >> FULL_LIBS = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/usr/lib/x86_64-linux-gnu -lOpenCL' >> FULL_CXXFLAGS = ' -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' >> FULL_LIBS = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/usr/lib/x86_64-linux-gnu -lOpenCL -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib' >> Resolving Rcpp include flags via tools/rcpp_include.R configure: single Rcpp installation: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages configure: R version: 4.6.0 (svn: 89956) configure: Rcpp Repository: CRAN configure: Rcpp Function.h: line with R_getVarEx + R_UnboundValue present = FALSE configure: WARNING: Rcpp looks like a CRAN install (no GitHub Remote* fields). configure: WARNING: On R-devel / R >= 4.5, stale CRAN headers can be incompatible configure: WARNING: with R (e.g. R_NamespaceRegistry). Consider configure: WARNING: remotes::install_github("RcppCore/Rcpp") or ensure configure: WARNING: install_github actually replaced the library. configure: Rcpp Function.h - `Function(const string& name, const string& ns)` C preprocessor path: configure: branch 3: R_getRegisteredNamespace configure: (R_VERSION < 4,5,0) => FALSE configure: (R_VERSION < 4,6,0 || R_SVN_REVISION < 89746) => FALSE [parts: R_VERSION < 4,6,0 = FALSE; R_SVN_REVISION < 89746 = FALSE] configure: R_SVN_REVISION (from Rversion.h) = 89956 configure: R session svn (R.version) = 89956 (should match Rversion.h for same R install) configure: (Branch 3 uses R_getRegisteredNamespace: undefined symbol usually means R headers are older than Rcpp expects, or a mismatched R/lib.) configure: R version: 4.6.0 (svn: 89956) configure: confirmed Rcpp package version 1.1.1.1.1 (library: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages) >> Rcpp Function.h branch (for Makevars) = 3 (see tools/rcpp_include.R stderr for conditions) >> RCPP_CPPFLAGS = '-I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include"' ** libs using C++ compiler: ‘g++-16 (Debian 16.1.0-1) 16.1.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXTB3CI/R.INSTALLff28b42979036/opencltools/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c OpenCL_helper.cpp -o OpenCL_helper.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c configure_OpenCL.cpp -o configure_OpenCL.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c cuda_probe.cpp -o cuda_probe.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c export_wrappers.cpp -o export_wrappers.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c glmbayes_getRegisteredNamespace.cpp -o glmbayes_getRegisteredNamespace.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c kernel_loader.cpp -o kernel_loader.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c opencl_detect.cpp -o opencl_detect.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c opencl_device_selection.cpp -o opencl_device_selection.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include" -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -DUSE_OPENCL -I/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -c opencltools_ccallables.cpp -o opencltools_ccallables.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o opencltools.so OpenCL_helper.o RcppExports.o configure_OpenCL.o cuda_probe.o export_wrappers.o glmbayes_getRegisteredNamespace.o kernel_loader.o opencl_detect.o opencl_device_selection.o opencltools_ccallables.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/usr/lib/x86_64-linux-gnu -lOpenCL -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/lib -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXTB3CI/R.INSTALLff28b42979036/opencltools/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXTB3CI/R.INSTALLff28b42979036/opencltools/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXTB3CI/R.INSTALLff28b42979036/opencltools/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-opencltools/00new/opencltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (opencltools)