• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-12) 14.3.0     GNU Fortran (Debian 14.3.0-12) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘occCite/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘occCite’ version ‘0.6.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘waffle’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘occCite’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/23s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [3s/3s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/9s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [13s/35s] ERROR   Running ‘testthat.R’ [12s/35s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(occCite)   >   > test_check("occCite")        OccCite query occurred on: 20 June, 2024        User query type: User-supplied list of taxa.        Sources for taxonomic rectification: GBIF Backbone Taxonomy             Taxonomic cleaning results:               Input Name Best Match Taxonomic Databases w/ Matches   1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy        Sources for occurrence data: gbif, bien                            Species Occurrences Sources   1 Protea cynaroides (L.) L. 2334 17        GBIF dataset DOIs:                          Species GBIF Access Date GBIF DOI   1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c        OccCite query occurred on: 20 June, 2024        User query type: User-supplied list of taxa.        Sources for taxonomic rectification: GBIF Backbone Taxonomy             Taxonomic cleaning results:               Input Name Best Match Taxonomic Databases w/ Matches   1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy        Sources for occurrence data: gbif                            Species Occurrences Sources   1 Protea cynaroides (L.) L. 2189 13        GBIF dataset DOIs:                          Species GBIF Access Date GBIF DOI   1 Protea cynaroides (L.) L. 2022-03-02 10.15468/dl.ztbx8c        OccCite query occurred on: 20 June, 2024        User query type: User-supplied list of taxa.        Sources for taxonomic rectification: GBIF Backbone Taxonomy             Taxonomic cleaning results:               Input Name Best Match Taxonomic Databases w/ Matches   1 Protea cynaroides Protea cynaroides (L.) L. GBIF Backbone Taxonomy        Sources for occurrence data: bien                            Species Occurrences Sources   1 Protea cynaroides (L.) L. 145 4   [1] "Checking ggplot version...4.0.2"   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Failed with error: 'there is no package called 'waffle''   Saving _problems/test-taxonRectification-30.R   Saving _problems/test-taxonRectification-49.R   [ FAIL 2 | WARN 3 | SKIP 18 | PASS 168 ]      ══ Skipped tests (18) ══════════════════════════════════════════════════════════   • !requireNamespace("waffle") is TRUE (2): 'test-sumFig.R:43:3',     'test-sumFig.R:52:3'   • GBIF login available (1): 'test-GBIFLoginManager.R:16:3'   • On CRAN (14): 'test-GBIFLoginManager.R:24:3', 'test-GBIFtableCleanup.R:6:3',     'test-gbifRetriever.R:6:3', 'test-gbifRetriever.R:29:3',     'test-getBIENpoints.R:6:3', 'test-getBIENpoints.R:28:3',     'test-getGBIFpoints.R:6:3', 'test-getGBIFpoints.R:24:3',     'test-occCitation.R:26:3', 'test-prevGBIFdownload.R:6:3',     'test-prevGBIFdownload.R:34:3', 'test-tabGBIF.R:9:3', 'test-tabGBIF.R:24:3',     'test-tabGBIF.R:48:3'   • internet connection established (1): 'test-occCitation.R:115:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-taxonRectification.R:30:3'): functions on which it depends function as necessary ──   Expected `temp$submittedName == temp$matchedName` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test-taxonRectification.R:49:3'): taxonRectification performs as expected ──   Expected `testResult$`Best Match`[1] == "Buteo buteo"` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE         [ FAIL 2 | WARN 3 | SKIP 18 | PASS 168 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [17s/39s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR