- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘nlme/DESCRIPTION’ ... OK
- this is package ‘nlme’ version ‘3.1-166’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘nlme’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
- used Fortran compiler: ‘GNU Fortran (Debian 14.2.0-6) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [52s/62s] OK
- checking Rd files ... [3s/4s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking usage of KIND in Fortran files ... OK
- checking examples ... [39s/47s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
anova.lme 4.644 0 5.054
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [51s/64s] OK
Processing ‘extras.Rin’
Running ‘anova.gls.R’ [1s/1s]
Running ‘augPred_lab.R’ [15s/17s]
Running ‘augPredmissing.R’ [0s/1s]
Running ‘coef.R’ [0s/1s]
Comparing ‘coef.Rout’ to ‘coef.Rout.save’ ... OK
Running ‘contrMat.R’ [0s/1s]
Running ‘corFactor.R’ [0s/0s]
Running ‘corStruct.R’ [0s/1s]
Running ‘data.frame.R’ [0s/1s]
Running ‘deparse.R’ [1s/1s]
Running ‘deviance.R’ [1s/1s]
Running ‘fitted.R’ [0s/0s]
Running ‘getData.R’ [0s/1s]
Running ‘getVarCov.R’ [1s/1s]
Running ‘gls.R’ [1s/1s]
Running ‘gnls-ch8.R’ [1s/1s]
Running ‘lmList.R’ [1s/1s]
Running ‘lme.R’ [3s/3s]
Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK
Running ‘missing.R’ [1s/1s]
Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ... OK
Running ‘nlme.R’ [2s/3s]
Running ‘nlme2.R’ [1s/2s]
Running ‘predict.lme.R’ [1s/1s]
Running ‘scoping.R’ [1s/2s]
Running ‘sigma-fixed-etc.R’ [14s/19s]
Running ‘updateLme.R’ [1s/1s]
Running ‘varConstProp.R’ [1s/2s]
Running ‘varFixed.R’ [1s/1s]
Running ‘varIdent.R’ [0s/1s]
- checking PDF version of manual ... [25s/31s] OK
- checking HTML version of manual ... [16s/26s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK