- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘mverse/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘mverse’ version ‘0.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mverse’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/16s] OK
- checking Rd files ... [0s/1s] NOTE
checkRd: (-1) hurricane.Rd:47-48: Lost braces
47 | \doi{10.1073/pnas.1402786111}{Female hurricanes are
| ^
checkRd: (-1) hurricane.Rd:55: Lost braces
55 | \doi{10.1038/s41562-020-0912-z}{Specification curve analysis}
| ^
checkRd: (-1) soccer.Rd:67: Lost braces; missing escapes or markup?
67 | {rater1} and {rater2}, and the 5-point scale values were
| ^
checkRd: (-1) soccer.Rd:67: Lost braces; missing escapes or markup?
67 | {rater1} and {rater2}, and the 5-point scale values were
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [2s/3s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/4s] ERROR
Running examples in ‘mverse-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add_branch_condition
> ### Title: Add branch conditions to a 'mverse' object.
> ### Aliases: add_branch_condition add_branch_condition.mverse
>
> ### ** Examples
>
> # Define branches and add them to an \code{mverse} object.
> y <- mutate_branch(alldeaths, log(alldeaths + 1))
> distribution <- family_branch(poisson, gaussian)
> # You can match branching options by providing the options
> # the way provide them when defining branches.
> match_poisson <- branch_condition(alldeaths, poisson)
> mv <- mverse(hurricane) %>%
+ add_mutate_branch(y) %>%
+ add_family_branch(distribution) %>%
+ add_branch_condition(match_poisson)
Error in `mutate()`:
ℹ In argument: `.results = .res`.
Caused by error:
! `.results` must be size 1, not 2.
Backtrace:
▆
1. ├─... %>% add_branch_condition(match_poisson)
2. ├─mverse::add_branch_condition(., match_poisson)
3. ├─mverse::add_family_branch(., distribution)
4. ├─mverse:::add_family_branch.mverse(., distribution)
5. │ └─mverse:::add_branch(.mverse, brs, nms)
6. │ └─mverse:::reset_parameters(.mverse)
7. │ └─multiverse::inside(.mverse, orig <- attr(.mverse, "source"))
8. │ └─multiverse::execute_universe(multiverse)
9. │ ├─multiverse::expand(multiverse)
10. │ └─multiverse:::expand.multiverse(multiverse)
11. │ ├─dplyr::select(...)
12. │ ├─dplyr::mutate(...)
13. │ └─dplyr:::mutate.data.frame(...)
14. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
15. │ ├─base::withCallingHandlers(...)
16. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
17. │ └─mask$eval_all_mutate(quo)
18. │ └─dplyr (local) eval()
19. ├─dplyr:::dplyr_internal_error(...)
20. │ └─rlang::abort(class = c(class, "dplyr:::internal_error"), dplyr_error_data = data)
21. │ └─rlang:::signal_abort(cnd, .file)
22. │ └─base::signalCondition(cnd)
23. └─dplyr (local) `<fn>`(`<dpl:::__>`)
24. └─rlang::abort(message, class = error_class, parent = parent, call = error_call)
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [16s/20s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘mverse_gettingstarted.Rmd’ using rmarkdown
Quitting from lines 207-210 [unnamed-chunk-6] (mverse_gettingstarted.Rmd)
Error: processing vignette 'mverse_gettingstarted.Rmd' failed with diagnostics:
Names can't be empty.
✖ Empty name found at location 8.
--- failed re-building ‘mverse_gettingstarted.Rmd’
--- re-building ‘mverse_intro_glmmodelling.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mverse.Rcheck/vign_test/mverse/vignettes/mverse_intro_glmmodelling_files/figure-html/unnamed-chunk-1-1.png
672x384 pixels, 8 bits/pixel, 233 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6011 bytes
Input file size = 6800 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4501
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4501
Output IDAT size = 4501 bytes (1510 bytes decrease)
Output file size = 4579 bytes (2221 bytes = 32.66% decrease)
Quitting from lines 140-143 [unnamed-chunk-3] (mverse_intro_glmmodelling.Rmd)
Error: processing vignette 'mverse_intro_glmmodelling.Rmd' failed with diagnostics:
Names can't be empty.
✖ Empty name found at location 8.
--- failed re-building ‘mverse_intro_glmmodelling.Rmd’
--- re-building ‘mverse_intro_regressionmodelling.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/mverse.Rcheck/vign_test/mverse/vignettes/mverse_intro_regressionmodelling_files/figure-html/unnamed-chunk-8-1.png
672x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18909 bytes
Input file size = 19011 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14671
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14671
Output IDAT size = 14671 bytes (4238 bytes decrease)
Output file size = 14749 bytes (4262 bytes = 22.42% decrease)
--- finished re-building ‘mverse_intro_regressionmodelling.Rmd’
SUMMARY: processing the following files failed:
‘mverse_gettingstarted.Rmd’ ‘mverse_intro_glmmodelling.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs, 1 NOTE