* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘mums2’ ... ** this is package ‘mums2’ version ‘0.1.1’ ** package ‘mums2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuKInZ6/R.INSTALL22084461db31e1/mums2/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AlphaDiversity.cpp -o AlphaDiversity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Annotation.cpp -o Annotation.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AnnotationController.cpp -o AnnotationController.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BetaDiversity.cpp -o BetaDiversity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BrayCurtisDissimilarity.cpp -o BrayCurtisDissimilarity.o gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c CleanSpectrum.c -o CleanSpectrum.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CommunityMatrix.cpp -o CommunityMatrix.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DecomposeMass.cpp -o DecomposeMass.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DetectNeutralLoses.cpp -o DetectNeutralLoses.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Distance.cpp -o Distance.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Diversity.cpp -o Diversity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DiversityMetricFactory.cpp -o DiversityMetricFactory.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c FragmentationTree.cpp -o FragmentationTree.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c GreedyHeuristic.cpp -o GreedyHeuristic.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HammingDistance.cpp -o HammingDistance.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HumanMetabolomicsDB.cpp -o HumanMetabolomicsDB.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JaccardDistance.cpp -o JaccardDistance.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ModifiedCosineScore.cpp -o ModifiedCosineScore.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MolecularFormula.cpp -o MolecularFormula.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MolecularMakeup.cpp -o MolecularMakeup.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c MorisitahornIndex.cpp -o MorisitahornIndex.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Rarefaction.cpp -o Rarefaction.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:29, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:5: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/check_r_headers.h:27:21: note: ‘#pragma message: R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 27 | #pragma message "R.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/check_r_headers.h:35:21: note: ‘#pragma message: Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410’ 35 | #pragma message "Rinternals.h has been included before any Rcpp headers. This can lead to hard-to-debug errors, and is not necessary. See https://github.com/RcppCore/Rcpp/issues/1410" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ReadSpectra.cpp -o ReadSpectra.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ScoringFactory.cpp -o ScoringFactory.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ShannonDiversityIndex.cpp -o ShannonDiversityIndex.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SimpsonsDiversityIndex.cpp -o SimpsonsDiversityIndex.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SorensonIndex.cpp -o SorensonIndex.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SpeciesRichnessDiversity.cpp -o SpeciesRichnessDiversity.o gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SpectralEntropy.c -o SpectralEntropy.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ThetaycDissimilarity.cpp -o ThetaycDissimilarity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c alphabet.cpp -o alphabet.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c alphabettextparser.cpp -o alphabettextparser.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c annotateMs2Features.cpp -o annotateMs2Features.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c composedelement.cpp -o composedelement.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c denovo_molecular_formula_prediction.cpp -o denovo_molecular_formula_prediction.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distMs2.cpp -o distMs2.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distributionprobabilityscorer.cpp -o distributionprobabilityscorer.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c diversityCalculations.cpp -o diversityCalculations.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c element.cpp -o element.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c entropy.cpp -o entropy.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c humanMetabolomicsDBController.cpp -o humanMetabolomicsDBController.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c isotopedistribution.cpp -o isotopedistribution.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moleculesequenceparser.cpp -o moleculesequenceparser.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ms2ms1compare.cpp -o ms2ms1compare.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c progressBar.cpp -o progressBar.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c realmassdecomposer.cpp -o realmassdecomposer.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spectrumReaders.cpp -o spectrumReaders.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c standardmoleculesequenceparser.cpp -o standardmoleculesequenceparser.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-alpha_diversity.cpp -o test-alpha_diversity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-annotation_controller.cpp -o test-annotation_controller.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-beta_diversity.cpp -o test-beta_diversity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-cpp_matrix.cpp -o test-cpp_matrix.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-diversity_metric_function.cpp -o test-diversity_metric_function.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-fragmentation_tree.cpp -o test-fragmentation_tree.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-greedy_heuristic.cpp -o test-greedy_heuristic.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-molecular_formula.cpp -o test-molecular_formula.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-molecular_formula_similarity.cpp -o test-molecular_formula_similarity.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-molecular_makeup.cpp -o test-molecular_makeup.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-rarefaction.cpp -o test-rarefaction.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-read_spectra.cpp -o test-read_spectra.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/sitmo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppThread/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/testthat/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c weights.cpp -o weights.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o mums2.so AlphaDiversity.o Annotation.o AnnotationController.o BetaDiversity.o BrayCurtisDissimilarity.o CleanSpectrum.o CommunityMatrix.o DecomposeMass.o DetectNeutralLoses.o Distance.o Diversity.o DiversityMetricFactory.o FragmentationTree.o GreedyHeuristic.o HammingDistance.o HumanMetabolomicsDB.o JaccardDistance.o ModifiedCosineScore.o MolecularFormula.o MolecularMakeup.o MorisitahornIndex.o Rarefaction.o RcppExports.o ReadSpectra.o ScoringFactory.o ShannonDiversityIndex.o SimpsonsDiversityIndex.o SorensonIndex.o SpeciesRichnessDiversity.o SpectralEntropy.o ThetaycDissimilarity.o alphabet.o alphabettextparser.o annotateMs2Features.o composedelement.o denovo_molecular_formula_prediction.o distMs2.o distributionprobabilityscorer.o diversityCalculations.o element.o entropy.o humanMetabolomicsDBController.o isotopedistribution.o moleculesequenceparser.o ms2ms1compare.o progressBar.o realmassdecomposer.o spectrumReaders.o standardmoleculesequenceparser.o test-alpha_diversity.o test-annotation_controller.o test-beta_diversity.o test-cpp_matrix.o test-diversity_metric_function.o test-fragmentation_tree.o test-greedy_heuristic.o test-molecular_formula.o test-molecular_formula_similarity.o test-molecular_makeup.o test-rarefaction.o test-read_spectra.o test-runner.o weights.o -latomic -lpthread -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuKInZ6/R.INSTALL22084461db31e1/mums2/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuKInZ6/R.INSTALL22084461db31e1/mums2/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuKInZ6/R.INSTALL22084461db31e1/mums2/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-mums2/00new/mums2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mums2)