- using R version 3.6.1 (2019-07-05)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘model4you/DESCRIPTION’ ... OK
- this is package ‘model4you’ version ‘0.9-3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘model4you’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/16s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in shell scripts ... OK
- checking line endings in Makefiles ... OK
- checking for GNU extensions in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking examples ... [29s/34s] OK

Examples with CPU or elapsed time > 5s

user system elapsed

pmforest 5.607 0.152 7.393

pmtree 5.688 0.034 6.481

pmodel 5.248 0.056 6.270

predict.pmtree 4.251 0.027 5.106 - checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [81s/89s] OK

Running ‘test-pmodel-test.R’ [23s/27s]

Running ‘test-pmodel.R’ [35s/38s]

Comparing ‘test-pmodel.Rout’ to ‘test-pmodel.Rout.save’ ...54,56d53

< Warning message:

< In model.frame.default(object$predictf, data = newdata, na.action = na.pass, :

< variable 'a' is not a factor

59,64c56,61

< Min. :6.319 Min. :-2.2799

< 1st Qu.:6.929 1st Qu.:-1.1221

< Median :7.104 Median : 0.2540

< Mean :7.093 Mean : 0.0459

< 3rd Qu.:7.302 3rd Qu.: 1.0339

< Max. :7.567 Max. : 2.7587

---

> Min. :6.083 Min. :-2.09411

> 1st Qu.:6.832 1st Qu.:-0.65812

> Median :7.097 Median : 0.08235

> Mean :7.061 Mean : 0.04625

> 3rd Qu.:7.277 3rd Qu.: 0.77876

> Max. :7.667 Max. : 2.34688

83,85d79

< Warning message:

< In model.frame.default(object$predictf, data = newdata, na.action = na.pass, :

< variable 'a' is not a factor

88,93c82,87

< Min. :1.873 Min. :-0.36744 Min. :0.1086 Min. :5.798

< 1st Qu.:1.957 1st Qu.: 0.03179 1st Qu.:0.1622 1st Qu.:6.552

< Median :1.987 Median : 0.14243 Median :0.1906 Median :6.816

< Mean :1.982 Mean : 0.10863 Mean :0.1974 Mean :6.759

< 3rd Qu.:2.008 3rd Qu.: 0.21164 3rd Qu.:0.2212 3rd Qu.:6.963

< Max. :2.098 Max. : 0.33714 Max. :0.3557 Max. :7.616

---

> Min. :1.865 Min. :-0.19163 Min. :0.1189 Min. :5.726

> 1st Qu.:1.972 1st Qu.: 0.02691 1st Qu.:0.1713 1st Qu.:6.640

> Median :1.993 Median : 0.09052 Median :0.2071 Median :6.849

> Mean :1.987 Mean : 0.08881 Mean :0.2079 Mean :6.766

> 3rd Qu.:2.016 3rd Qu.: 0.18074 3rd Qu.:0.2348 3rd Qu.:6.961

> Max. :2.060 Max. : 0.31687 Max. :0.3339 Max. :7.481

95,100c89,94

< Min. :5.265 Min. :-2.3418

< 1st Qu.:6.805 1st Qu.: 0.2223

< Median :7.823 Median : 1.0440

< Mean :7.606 Mean : 0.8467

< 3rd Qu.:8.519 3rd Qu.: 1.6195

< Max. :9.331 Max. : 2.5813

---

> Min. :5.522 Min. :-1.2053

> 1st Qu.:6.850 1st Qu.: 0.1870

> Median :7.373 Median : 0.6193

> Mean :7.440 Mean : 0.6739

> 3rd Qu.:8.074 3rd Qu.: 1.2791

> Max. :9.123 Max. : 2.4165

107c101

< 479.272990 56.304019 1.554203 44.625821 35.586728

---

> 276.42033 94.80836 56.22248 76.87214 49.14115

110c104

< 153.05987 28.35612 36.75283 23.65575 34.97163

---

> 175.05534 55.50342 30.40423 26.41688 38.69822

Running ‘test-pmtree.R’ [22s/23s]

Comparing ‘test-pmtree.Rout’ to ‘test-pmtree.Rout.save’ ...95c95,102

< | [2] age <= 50: n = 502

---

> | [2] age <= 50

> | | [3] age <= 42: n = 153

> | | (Intercept) trt2

> | | -0.1300531 0.5027284

> | | [4] age > 42: n = 371

> | | (Intercept) trt2

> | | -0.9932518 0.7773634

> | [5] age > 50: n = 476

97,100c104

< | -1.162126 1.162126

< | [3] age > 50: n = 498

< | (Intercept) trt2

< | -1.034074 1.980880

---

> | -0.7958013 1.9056497

102,103c106,107

< Number of inner nodes: 1

< Number of terminal nodes: 2

---

> Number of inner nodes: 2

> Number of terminal nodes: 3

105c109

< Objective function: 601.9864

---

> Objective function: 621.198

108c112,119

< | [2] age <= 50: n = 502

---

> | [2] age <= 50

> | | [3] age <= 42: n = 153

> | | (Intercept) trt2

> | | -0.1300531 0.5027284

> | | [4] age > 42: n = 371

> | | (Intercept) trt2

> | | -0.9932518 0.7773634

> | [5] age > 50: n = 476

110,113c121

< | -1.162126 1.162126

< | [3] age > 50: n = 498

< | (Intercept) trt2

< | -1.034074 1.980880

---

> | -0.7958013 1.9056497

115,116c123,124

< Number of inner nodes: 1

< Number of terminal nodes: 2

---

> Number of inner nodes: 2

> Number of terminal nodes: 3

118c126

< Objective function: 601.9864

---

> Objective function: 621.198

122c130,137

< | [2] age <= 50: n = 502

---

> | [2] age <= 50

> | | [3] age <= 42: n = 153

> | | (Intercept) trt2

> | | -0.1300531 0.5027284

> | | [4] age > 42: n = 371

> | | (Intercept) trt2

> | | -0.9932518 0.7773634

> | [5] age > 50: n = 476

124,127c139

< | -1.162126 1.162126

< | [3] age > 50: n = 498

< | (Intercept) trt2

< | -1.034074 1.980880

---

> | -0.7958013 1.9056497

129,130c141,142

< Number of inner nodes: 1

< Number of terminal nodes: 2

---

> Number of inner nodes: 2

> Number of terminal nodes: 3

132c144

< Objective function: 601.9864

---

> Objective function: 621.198

136c148,155

< | [2] age <= 50: n = 22

---

> | [2] age <= 50

> | | [3] age <= 43: n = 8

> | | (Intercept) trt2

> | | -0.4367177 0.7420993

> | | [4] age > 43: n = 14

> | | (Intercept) trt2

> | | -0.9253406 0.6662319

> | [5] age > 50: n = 20

138,141c157

< | -1.162126 1.162126

< | [3] age > 50: n = 20

< | (Intercept) trt2

< | -1.034074 1.980880

---

> | -0.7958013 1.9056497

143,144c159,160

< Number of inner nodes: 1

< Number of terminal nodes: 2

---

> Number of inner nodes: 2

> Number of terminal nodes: 3

146c162

< Objective function: 91.09863

---

> Objective function: 94.40128

156,159c172,179

< | [2] age <= 50: n = 502

< | (Intercept) trt2

< | -1.162126 1.162126

< | [3] age > 50: n = 498

---

> | [2] age <= 50

> | | [3] age <= 42: n = 153

> | | (Intercept) trt2

> | | -0.1300531 0.5027284

> | | [4] age > 42: n = 371

> | | (Intercept) trt2

> | | -0.9932518 0.7773634

> | [5] age > 50: n = 476

161c181

< | -1.034074 1.980880

---

> | -0.7958013 1.9056497

163,164c183,184

< Number of inner nodes: 1

< Number of terminal nodes: 2

---

> Number of inner nodes: 2

> Number of terminal nodes: 3

166c186

< Objective function (negative log-likelihood): 601.9864

---

> Objective function (negative log-likelihood): 621.198

180,181c200,201

< statistic 1.446675e+01

< p.value 7.220786e-04

---

> statistic 1.754685e+01

> p.value 1.547928e-04

185,186c205,206

< statistic 2.0885768

< p.value 0.3519422

---

> statistic 9.609115153

> p.value 0.008192325

190,191c210,221

< statistic 4.1541909

< p.value 0.1252936

---

> statistic 0.7184773

> p.value 0.6982077

>

> $`4`

> age

> statistic 2.0024795

> p.value 0.3674237

>

> $`5`

> age

> statistic 1.1781017

> p.value 0.5548537

196,197c226,227

< statistic 7.19313420

< p.value 0.02741768

---

> statistic 7.40146997

> p.value 0.02470536

201,202c231,232

< statistic 2.7056665

< p.value 0.2585068

---

> statistic 8.03869435

> p.value 0.01796469

204a235,240

> NULL

>

> $`4`

> NULL

>

> $`5`

206,207c242,243

< statistic 3.6772322

< p.value 0.1590374

---

> statistic 1.1198024

> p.value 0.5712655

212c248

< 'log Lik.' -601.9864 (df=5)

---

> 'log Lik.' -621.198 (df=8)

214c250

< 'log Lik.' -601.9864 (df=4)

---

> 'log Lik.' -621.198 (df=6)

217c253

< [1] -601.9864

---

> [1] -621.198

219c255

< [1] -601.9864

---

> [1] -621.198

221c257

< [1] -601.9864

---

> [1] -621.198

223c259

< [1] -601.9864

---

> [1] -621.198

228c264

< 'log Lik.' -601.9864 (df=4)

---

> 'log Lik.' -621.198 (df=6)

230c266

< 'log Lik.' -623.9381 (df=NA)

---

> 'log Lik.' -674.0438 (df=NA)

236c272

< 'log Lik.' 24.60555 (df=4)

---

> 'log Lik.' 55.4331 (df=6)

343c379

< | | [3] tests <= 57.69231: n = 124

---

> | | [3] tests <= 57.69231: n = 123

345c381

< | | 42.603550 -6.488818

---

> | | 41.586538 -5.471806

348c384

< | | 54.967949 -1.729082

---

> | | 54.807692 -1.568826

353c389

< | | [7] tests > 92.30769: n = 88

---

> | | [7] tests > 92.30769: n = 89

355c391

< | | 87.73389 -10.65998

---

> | | 89.06883 -11.99492

360c396

< Objective function: -282919.6

---

> Objective function: -276926.2

401c437

< 184270

---

> 167022.9

413c449

< 247262.1814 67543.0073 18595.5202 3297.5797 959.4839

---

> 269734.5165 72661.7239 15878.6172 2973.8659 932.7745

507,516c543,550

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 4: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 5: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 3: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 4: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite.

520,525c554,557

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite.

529,538c561,568

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 4: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 5: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,3 ; beta may be infinite.

> 3: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 4: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite.

542,549c572,577

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 4: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 3: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite.

553,562c581,588

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 4: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 5: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,3 ; beta may be infinite.

> 3: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 4: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite.

566,573c592,597

< 1: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 2: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 3: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< Ran out of iterations and did not converge

< 4: In fitter(X, Y, istrat, offset, init, control, weights = weights, :

< one or more coefficients may be infinite

---

> 1: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 2: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2 ; beta may be infinite.

> 3: In fitter(X, Y, strats, offset, init, control, weights = weights, :

> Loglik converged before variable 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269 ; beta may be infinite. - checking PDF version of manual ... OK
- DONE

Status: OK