• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘mlr3pipelines/DESCRIPTION’ ... OK
• this is package ‘mlr3pipelines’ version ‘0.10.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mlr3pipelines’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [93s/149s] OK
• checking Rd files ... [4s/5s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [62s/93s] OK Examples with CPU (user + system) or elapsed time > 5s                            user system elapsed mlr_pipeops_nmf 5.003 0.090 6.611 mlr_graphs_ovr 3.983 0.069 7.105 mlr_pipeops_tunethreshold 3.576 0.053 5.943 mlr_pipeops 3.065 0.038 5.094
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [439s/218s] ERROR   Running ‘testthat.R’ [438s/218s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > if (requireNamespace("testthat", quietly = TRUE)) {   + library("checkmate")   + library("testthat")   + library("mlr3")   + library("paradox")   + library("mlr3pipelines")   + test_check("mlr3pipelines")   + }   Starting 2 test processes.   > test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_PipeOp.R: Training test_autotrain   > test_PipeOp.R: Predicting test_autotrain   > test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   Saving _problems/test_filter_ensemble-294.R   Saving _problems/test_filter_ensemble-307.R   > test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.   > test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.   > test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").   > test_multiplicities.R:   > test_multiplicities.R: [[1]]   > test_multiplicities.R: [1] 0   > test_multiplicities.R:   > test_multiplicities.R:   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"   > test_pipeop_isomap.R: 2025-11-22 16:12:30.232359: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.233057: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.243508: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:30.263711: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:30.314084: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.314538: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.322394: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:30.346589: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:30.37029: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.370896: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.384507: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:30.431091: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:30.432277: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:30.457181: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.457661: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.472389: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:30.518709: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:30.519943: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:30.605971: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.606414: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.641751: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:30.744873: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:30.777544: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:30.778197: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:30.808877: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.011988: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:31.016407: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:31.153255: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.155127: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.162551: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.181881: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:31.21362: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.214286: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.240543: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.283584: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:31.286432: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:31.41966: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.422407: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.429835: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.449253: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:31.493159: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.493842: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.508025: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.554907: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:31.556088: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:31.629682: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.630115: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.637001: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.654894: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:31.743954: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.744621: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.774234: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.82285: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:31.824104: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:31.906486: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.90695: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:31.915493: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:31.935722: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:31.986528: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:31.987262: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.001921: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.046196: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:32.047416: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:32.12589: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:32.126355: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.13389: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.153006: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:32.199826: L-Isomap embed START   > test_pipeop_isomap.R: 2025-11-22 16:12:32.200462: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.226701: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.27192: embedding   > test_pipeop_isomap.R: 2025-11-22 16:12:32.273197: DONE   > test_pipeop_isomap.R: 2025-11-22 16:12:32.357986: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:32.358428: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.365198: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.383211: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:32.459232: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:32.459711: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.468831: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.488058: Classical Scaling   > test_pipeop_isomap.R: 2025-11-22 16:12:32.511642: Isomap START   > test_pipeop_isomap.R: 2025-11-22 16:12:32.512089: constructing knn graph   > test_pipeop_isomap.R: 2025-11-22 16:12:32.519428: calculating geodesic distances   > test_pipeop_isomap.R: 2025-11-22 16:12:32.538722: Classical Scaling   > test_pipeop_nmf.R: [PipeOpNMFstate]   > test_pipeop_nmf.R: [PipeOpNMFstate]   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_task_preproc.R: Training debug_affectcols   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   > test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.   [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]      ══ Skipped tests (100) ═════════════════════════════════════════════════════════   • On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',     'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',     'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',     'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',     'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',     'test_learner_weightedaverage.R:57:3',     'test_learner_weightedaverage.R:105:3',     'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',     'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',     'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',     'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',     'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',     'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',     'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',     'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',     'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',     'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',     'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',     'test_pipeop_encodelmer.R:80:3', 'test_pipeop_encodepl.R:5:3',     'test_pipeop_encodepl.R:72:3', 'test_pipeop_featureunion.R:9:3',     'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',     'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',     'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',     'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',     'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',     'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',     'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_learnercv.R:31:3',     'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',     'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',     'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',     'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',     'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',     'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',     'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',     'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',     'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',     'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',     'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',     'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',     'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',     'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',     'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',     'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',     'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',     'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',     'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',     'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',     'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'   • Skipping (1): 'test_GraphLearner.R:1278:3'   • empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',     'test_ppl.R:61:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──   Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.   Differences:   `actual`: FALSE   `expected`: TRUE      ── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──   Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.   Differences:   `actual` is a character vector ('Mean relative difference: 0.2977876')   `expected` is a logical vector (TRUE)      Backtrace:       ▆    1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3    2. └─testthat::expect_true(...)      [ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/8s] OK
• checking PDF version of manual ... [38s/48s] OK
• checking HTML version of manual ... [20s/32s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR