Check results for 'microdiluteR'

using R version 4.6.1 (2026-06-24)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-16 (Debian 16.1.0-2) 16.1.0 GNU Fortran (Debian 16.1.0-2) 16.1.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8 * current time: 2026-07-11 15:38:28 UTC
checking for file ‘microdiluteR/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘microdiluteR’ version ‘1.0.1’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘microdiluteR’ can be installed ... OK See the install log for details.
checking package directory ... OK
checking for future file timestamps ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [2s/3s] OK
checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
checking whether the package can be unloaded cleanly ... [2s/2s] OK
checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
checking loading without being on the library search path ... [2s/3s] OK
checking whether startup messages can be suppressed ... [2s/2s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [11s/15s] OK
checking Rd files ... [0s/1s] OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/0s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... [5s/7s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [11s/12s] ERROR Running ‘testthat.R’ [10s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(microdiluteR) > > test_check("microdiluteR") Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Saving _problems/test-apply_sign_test-27.R Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter experiment identifier for exp1: Enter experiment identifier for exp1: Enter experiment identifier for exp2: Enter group name for grp1: Enter group name for grp1: Enter group name for grp2: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter threshold for distinguishing valid from invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: b . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: c . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: A.b . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: B.b . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: A.c . Do you want to set this group as valid? (y/n): Non-monotonic well positions detected for case: B.c . Do you want to set this group as valid? (y/n): Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter threshold for distinguishing valid from invalid samples: Enter treatment of row A: Enter treatment of row B: Enter treatment of row C: Enter treatment of row D: Enter treatment of row E: Enter treatment of row F: Enter treatment of row G: Enter treatment of row H: Enter concentration of row A: Enter concentration of row B: Enter concentration of row C: Enter concentration of row D: Enter concentration of row E: Enter concentration of row F: Enter concentration of row G: Enter concentration of row H: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: Enter group name for grp1: Enter experiment identifier for exp1: Enter 'threshold' for specifying a threshold or 'samples' for directly providing invalid samples: Enter well positions (e.g. A-2) of invalid samples separated by spaces: Enter treatment of column 1: Enter treatment of column 2: Enter treatment of column 3: Enter treatment of column 4: Enter treatment of column 5: Enter treatment of column 6: Enter treatment of column 7: Enter treatment of column 8: Enter treatment of column 9: Enter treatment of column 10: Enter treatment of column 11: Enter treatment of column 12: Enter concentration of column 1: Enter concentration of column 2: Enter concentration of column 3: Enter concentration of column 4: Enter concentration of column 5: Enter concentration of column 6: Enter concentration of column 7: Enter concentration of column 8: Enter concentration of column 9: Enter concentration of column 10: Enter concentration of column 11: Enter concentration of column 12: [ FAIL 1 | WARN 1 | SKIP 0 | PASS 132 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-apply_sign_test.R:27:3'): apply_sign_test() correctly applies sign test ── Expected `unique(result$p)` to equal `c(1, 0.0156)`. Differences: 1/2 mismatches [2] 0.0156 - 0.0156 == 2.5e-05 [ FAIL 1 | WARN 1 | SKIP 0 | PASS 132 ] Error: ! Test failures. Execution halted
checking PDF version of manual ... [5s/7s] OK
checking HTML version of manual ... [2s/3s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 1 ERROR