• using R version 4.5.1 (2025-06-13)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘micompr/DESCRIPTION’ ... OK
• this is package ‘micompr’ version ‘1.1.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘micompr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/11s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] ERROR Running examples in ‘micompr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: assumptions.cmpoutput > ### Title: Get assumptions for parametric tests performed on output > ### comparisons > ### Aliases: assumptions.cmpoutput > > ### ** Examples > > > # Create a cmpoutput object from the provided datasets > cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls) > > # Get the assumptions for the parametric tests performed in cmp > acmp <- assumptions(cmp) Error in MVN::mvn(data[fidx, 1:min(nobs - 1, nvars)], mvnTest = "royston", :   unused arguments (mvnTest = "royston", univariateTest = "SW") Calls: assumptions -> assumptions.cmpoutput -> assumptions_manova Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/23s] ERROR   Running ‘testthat.R’ [16s/23s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # Copyright (c) 2016 Nuno Fachada   > # Distributed under the MIT License (http://opensource.org/licenses/MIT)   >   > library(testthat)   >   > test_check("micompr")   Loading required package: micompr   [ FAIL 4 | WARN 62 | SKIP 0 | PASS 287 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_assumptions.R:25:5'): assumptions_manova constructs the expected objects ──   Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")   Backtrace:       ▆    1. └─micompr::assumptions_manova(iris[, 1:4], iris[, 5]) at test_assumptions.R:25:5   ── Error ('test_assumptions.R:59:5'): assumptions_manova throws the expected warnings ──   Error in `MVN::mvn(data[fidx, 1:min(nobs - 1, nvars)], mvnTest = "royston",       univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")   Backtrace:       ▆    1. ├─testthat::expect_warning(...) at test_assumptions.R:59:5    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─micompr::assumptions_manova(bogus_data, factors)   ── Error ('test_cmpoutput.R:214:3'): assumptions.cmpoutput creates the correct object ──   Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")   Backtrace:       ▆    1. ├─micompr::assumptions(cmp) at test_cmpoutput.R:214:3    2. └─micompr:::assumptions.cmpoutput(cmp)    3. └─micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls)   ── Error ('test_micomp.R:281:3'): micomp assumptions have the correct properties ──   Error in `MVN::mvn(data[fidx, ], mvnTest = "royston", univariateTest = "SW")`: unused arguments (mvnTest = "royston", univariateTest = "SW")   Backtrace:       ▆    1. ├─micompr::assumptions(mic1a) at test_micomp.R:281:3    2. └─micompr:::assumptions.micomp(mic1a)    3. └─base::lapply(obj, function(x) assumptions(x))    4. └─micompr (local) FUN(X[[i]], ...)    5. ├─micompr::assumptions(x)    6. └─micompr:::assumptions.cmpoutput(x)    7. └─micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls)      [ FAIL 4 | WARN 62 | SKIP 0 | PASS 287 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [17s/23s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘paper.Rnw’ using knitr Quitting from paper.Rnw:340-342 [sunspot3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `MVN::mvn()`: ! unused arguments (mvnTest = "royston", univariateTest = "SW") --- Backtrace:     x  1. +-micompr::assumptions(cmp)  2. \-micompr:::assumptions.cmpoutput(cmp)  3. \-micompr::assumptions_manova(scores[, 1:npcs[i]], obs_lvls) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'paper.Rnw' failed with diagnostics: unused arguments (mvnTest = "royston", univariateTest = "SW") --- failed re-building ‘paper.Rnw’ --- re-building ‘tolatex-examples.Rnw’ using knitr --- finished re-building ‘tolatex-examples.Rnw’ SUMMARY: processing the following file failed:   ‘paper.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/8s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs