* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘mgcv’ ...
** this is package ‘mgcv’ version ‘1.9-5’
** package ‘mgcv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16.2.0-3) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptCUKiq/R.INSTALL3c32f32d86f8cd/mgcv/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxph.c -o coxph.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c davies.c -o davies.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discrete.c -o discrete.o
discrete.c: In function ‘tensorXty2’:
discrete.c:392:11: warning: unused variable ‘p1’ [-Wunused-variable]
392 | double *p1,*M,*Xyb,*Xyp,*xy,*xym,done=1.0,dzero=0.0;
| ^~
discrete.c: In function ‘tensorXb’:
discrete.c:517:51: warning: unused variable ‘k0’ [-Wunused-variable]
517 | int pb=1,md,*kp,*kd,pd,i,j,q,*c,l,kk,ii,ok,*off,k0;
| ^~
discrete.c:517:43: warning: unused variable ‘ok’ [-Wunused-variable]
517 | int pb=1,md,*kp,*kd,pd,i,j,q,*c,l,kk,ii,ok,*off,k0;
| ^~
discrete.c:517:40: warning: unused variable ‘ii’ [-Wunused-variable]
517 | int pb=1,md,*kp,*kd,pd,i,j,q,*c,l,kk,ii,ok,*off,k0;
| ^~
discrete.c: In function ‘Xbdspace’:
discrete.c:664:7: warning: unused variable ‘nb’ [-Wunused-variable]
664 | int nb,i,q,j,c1,dC=0,maxrow=0,maxp=0,pti=0,maxdt=0;
| ^~
discrete.c: In function ‘XWyd’:
discrete.c:1478:32: warning: unused variable ‘zero’ [-Wunused-variable]
1478 | int *tps,maxm=0,maxp=0,one=1,zero=0,*pt,add,q,kk,n_XWy,maxdt=0;//,*iwork;
| ^~~~
discrete.c: In function ‘XWydspace’:
discrete.c:1426:8: warning: ‘pti’ may be used uninitialized [-Wmaybe-uninitialized]
1426 | if (maxp < pti) maxp=pti;
| ^
discrete.c:1419:13: note: ‘pti’ was declared here
1419 | int i,j,q,pti,maxm=0,maxdt=0,maxp=0;
| ^~~
In file included from discrete.c:29:
discrete.c: In function ‘ncvd’:
mgcv.h:62:14: warning: ‘A’ may be used uninitialized [-Wmaybe-uninitialized]
62 | #define FREE R_chk_free
discrete.c:3812:29: note: in expansion of macro ‘FREE’
3812 | FREE(B);FREE(cs);FREE(mk);FREE(A);FREE(Aaa);FREE(IAaa);FREE(IA);FREE(ba);FREE(rp);
| ^~~~
discrete.c:3348:11: note: ‘A’ was declared here
3348 | double *A,*A2,**A1,*Aaa,*IAaa,*Ap,*Aaap,*IA,*IAp,*ba,*bp,*rp,one=1.0,zero=0.0,*dp0,*dp1,*dp2,
| ^
mgcv.h:62:14: warning: ‘A2’ may be used uninitialized [-Wmaybe-uninitialized]
62 | #define FREE R_chk_free
discrete.c:3813:53: note: in expansion of macro ‘FREE’
3813 | FREE(beta2);FREE(L2);FREE(U2);FREE(mu2);FREE(wij);FREE(A2);FREE(ba2);FREE(ind);FREE(a1);FREE(a2);FREE(thlim);
| ^~~~
discrete.c:3348:14: note: ‘A2’ was declared here
3348 | double *A,*A2,**A1,*Aaa,*IAaa,*Ap,*Aaap,*IA,*IAp,*ba,*bp,*rp,one=1.0,zero=0.0,*dp0,*dp1,*dp2,
| ^~
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gdi.c -o gdi.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c magic.c -o magic.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mat.c -o mat.o
mat.c: In function ‘partial_band_chol’:
mat.c:4202:12: warning: unused variable ‘z’ [-Wunused-variable]
4202 | double x,z,*Ap,Rii,*p,*p1;
| ^
mat.c: In function ‘XWXband’:
mat.c:4261:24: warning: unused variable ‘wp’ [-Wunused-variable]
4261 | double *Xi, *Xj, x, *wp;
| ^~
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mgcv.c -o mgcv.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc.c -o misc.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvn.c -o mvn.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ncv.c -o ncv.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qp.c -o qp.o
qp.c: In function ‘QPCLS’:
qp.c:429:10: warning: unused variable ‘x’ [-Wunused-variable]
429 | double x;
| ^
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c soap.c -o soap.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparse-smooth.c -o sparse-smooth.o
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sparse.c -o sparse.o
sparse.c: In function ‘isa1p’:
sparse.c:1970:27: warning: unused variable ‘xx’ [-Wunused-variable]
1970 | double *Sx,Lii,*Sj0,sls,xx,*iLd,invjj,invii;
| ^~
sparse.c:1970:19: warning: unused variable ‘Sj0’ [-Wunused-variable]
1970 | double *Sx,Lii,*Sj0,sls,xx,*iLd,invjj,invii;
| ^~~
sparse.c:1970:14: warning: unused variable ‘Lii’ [-Wunused-variable]
1970 | double *Sx,Lii,*Sj0,sls,xx,*iLd,invjj,invii;
| ^~~
sparse.c:1969:30: warning: unused variable ‘tid’ [-Wunused-variable]
1969 | int *Sp,*Si,i,j,k,q,*dim,n,tid,kjj,ki,kji,nx,*r,*d,*sin;
| ^~~
sparse.c:1968:34: warning: unused variable ‘kr’ [-Wunused-variable]
1968 | SEXP i_sym,x_sym,dim_sym,p_sym,kr;
| ^~
gcc-16 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tprs.c -o tprs.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptCUKiq/R.INSTALL3c32f32d86f8cd/mgcv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptCUKiq/R.INSTALL3c32f32d86f8cd/mgcv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptCUKiq/R.INSTALL3c32f32d86f8cd/mgcv/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-mgcv/00new/mgcv/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mgcv)