Install log for 'matrixCorr'

* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘matrixCorr’ ...
** this is package ‘matrixCorr’ version ‘0.10.0’
** package ‘matrixCorr’ successfully unpacked and MD5 sums checked
** using staged installation
checking for required atomic ops support...
warning: could not compile atomic probe; falling back to default detection
  not required
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQD5aKr/R.INSTALLbe2825951eb38/matrixCorr/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c biweight_mid_corr.cpp -o biweight_mid_corr.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bland_altman.cpp -o bland_altman.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bland_altman_repeated.cpp -o bland_altman_repeated.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ccc_repeated.cpp -o ccc_repeated.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ccc_repeated_helper.cpp -o ccc_repeated_helper.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ccc_repeated_mixed_model.cpp -o ccc_repeated_mixed_model.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c concordance_corr.cpp -o concordance_corr.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c distance_correlation.cpp -o distance_correlation.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kendall_corr.cpp -o kendall_corr.o
kendall_corr.cpp: In instantiation of ‘double {anonymous}::bisect_root(Func&&, double, double, double, double, double, int) [with Func = const kendall_el_ratio_stat(const arma::vec&, double, double&)::<lambda(double)>&]’:
kendall_corr.cpp:472:25:   required from here
  472 |     lambda = bisect_root(g, lo, hi, g_lo, g_hi);
      |              ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
kendall_corr.cpp:110:10: warning: variable ‘f_right’ set but not used [-Wunused-but-set-variable]
  110 |   double f_right = f_hi;
      |          ^~~~~~~
kendall_corr.cpp: In instantiation of ‘double {anonymous}::bisect_root(Func&&, double, double, double, double, double, int) [with Func = const kendall_ifel_ci_core(const arma::vec&, const arma::vec&, double, double, double&, double&)::<lambda(double)>&]’:
kendall_corr.cpp:529:24:   required from here
  529 |       lwr = bisect_root(f, left_start, tau_hat, f_left, f_tau);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
kendall_corr.cpp:110:10: warning: variable ‘f_right’ set but not used [-Wunused-but-set-variable]
  110 |   double f_right = f_hi;
      |          ^~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c partial_correlation.cpp -o partial_correlation.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pearson.cpp -o pearson.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rmcorr.cpp -o rmcorr.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c robust_correlations.cpp -o robust_correlations.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c schafer_strimmer_shrinkage_correlation.cpp -o schafer_strimmer_shrinkage_correlation.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c spearman.cpp -o spearman.o
spearman.cpp: In instantiation of ‘double {anonymous}::bisect_root(Func&&, double, double, double, double, double, int) [with Func = const spearman_jel_ci_core(const arma::vec&, const arma::vec&, double, double, double&, double&)::<lambda(double)>&]’:
spearman.cpp:139:24:   required from here
  139 |       lwr = bisect_root(g, -1.0, u, g_lo, g_u);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
spearman.cpp:63:10: warning: variable ‘f_right’ set but not used [-Wunused-but-set-variable]
   63 |   double f_right = f_hi;
      |          ^~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c tetrachoric.cpp -o tetrachoric.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -DARMA_USE_CURRENT -fpic  -g -O2 -Wall -pedantic -mtune=native   -c validate_corr_input.cpp -o validate_corr_input.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o matrixCorr.so RcppExports.o biweight_mid_corr.o bland_altman.o bland_altman_repeated.o ccc_repeated.o ccc_repeated_helper.o ccc_repeated_mixed_model.o concordance_corr.o distance_correlation.o kendall_corr.o partial_correlation.o pearson.o rmcorr.o robust_correlations.o schafer_strimmer_shrinkage_correlation.o spearman.o tetrachoric.o validate_corr_input.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQD5aKr/R.INSTALLbe2825951eb38/matrixCorr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQD5aKr/R.INSTALLbe2825951eb38/matrixCorr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQD5aKr/R.INSTALLbe2825951eb38/matrixCorr/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-matrixCorr/00new/matrixCorr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matrixCorr)