- using R version 4.4.1 (2024-06-14)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-3) 14.2.0
GNU Fortran (Debian 14.2.0-3) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘manynet/DESCRIPTION’ ... OK
- this is package ‘manynet’ version ‘1.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘oaqc’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘manynet’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking whether startup messages can be suppressed ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [34s/40s] OK
- checking Rd files ... [2s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking examples ... [34s/46s] ERROR
Running examples in ‘manynet-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: motif_node
> ### Title: Motifs at the nodal level
> ### Aliases: motif_node node_by_tie node_by_triad node_by_quad node_by_path
>
> ### ** Examples
>
> task_eg <- to_named(to_uniplex(ison_algebra, "tasks"))
> (tie_cen <- node_by_tie(task_eg))
# A tibble: 16 × 33
names fromAna fromBrandi fromClara fromDenise fromErin fromFern fromGlen
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Ana 0 0 0 0 0.3 0 0
2 Brandi 0 0 0 0 0 0 1.2
3 Clara 0 0 0 0 0.15 0.75 0
4 Denise 0 0 0 0 0 0 0
5 Erin 0.3 0 0.15 0 0 0.45 0
6 Fern 0 0 0.6 0 0.75 0 0
# ℹ 10 more rows
# ℹ 25 more variables: fromHarper <dbl>, fromIris <dbl>, fromJose <dbl>,
# fromKennedy <dbl>, fromLondyn <dbl>, fromMattie <dbl>, fromNathan <dbl>,
# fromOtto <dbl>, fromPatrick <dbl>, toAna <dbl>, toBrandi <dbl>,
# toClara <dbl>, toDenise <dbl>, toErin <dbl>, toFern <dbl>, toGlen <dbl>,
# toHarper <dbl>, toIris <dbl>, toJose <dbl>, toKennedy <dbl>,
# toLondyn <dbl>, toMattie <dbl>, toNathan <dbl>, toOtto <dbl>, …
> (triad_cen <- node_by_triad(task_eg))
# A tibble: 16 × 17
names X003 X012 X102 X021D X021U X021C X111D X111U X030T X030C X201 X120D
<chr> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl>
1 Ana 23 11 39 0 0 0 2 2 0 0 17 0
2 Brandi 21 6 47 0 0 0 5 6 0 0 10 0
3 Clara 34 3 46 0 0 0 2 1 0 0 13 0
4 Denise 52 6 28 0 0 0 0 0 0 0 18 0
5 Erin 17 11 37 1 0 1 6 7 0 0 15 1
6 Fern 23 8 40 1 0 0 3 3 0 0 18 1
# ℹ 10 more rows
# ℹ 4 more variables: X120U <dbl>, X120C <dbl>, X210 <dbl>, X300 <dbl>
> node_by_quad(manynet::ison_southern_women)
The oaqc package is required to run this function. Would you like to install oaqc from CRAN? (Yes/no/cancel)
Installing package into ‘/home/hornik/tmp/scratch/RtmpmKQOxi/RLIBS_34c71049f62c3b’
(as ‘lib’ is unspecified)
Warning: package ‘oaqc’ is not available for this version of R
A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Error in loadNamespace(x) : there is no package called ‘oaqc’
Calls: node_by_quad ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [26s/19s] ERROR
Running ‘testthat.R’ [25s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(manynet)
>
> test_check("manynet")
Starting 2 test processes
[ FAIL 1 | WARN 1 | SKIP 21 | PASS 544 ]
══ Skipped tests (21) ══════════════════════════════════════════════════════════
• On CRAN (21): 'test-manip_as.R:86:3', 'test-manip_split.R:49:3',
'test-map_autographr.R:2:3', 'test-map_autographr.R:17:3',
'test-map_autographr.R:31:3', 'test-map_autographr.R:47:3',
'test-map_autographr.R:65:3', 'test-map_autographr.R:90:3',
'test-map_autographr.R:102:3', 'test-map_autographr.R:111:3',
'test-map_autographr.R:117:3', 'test-map_autographr.R:124:3',
'test-map_autographr.R:137:3', 'test-map_autographr.R:154:3',
'test-map_autographr.R:174:3', 'test-map_autographr.R:183:3',
'test-mark_nodes.R:13:3', 'test-mark_nodes.R:22:3', 'test-mark_nodes.R:62:3',
'test-mark_ties.R:24:3', 'test-mark_ties.R:33:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-motif_census.R:38:1'): (code run outside of `test_that()`) ─────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'oaqc'
Backtrace:
▆
1. ├─manynet::node_by_quad(ison_southern_women) at test-motif_census.R:38:1
2. └─base::loadNamespace(x)
3. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
4. └─base (local) withOneRestart(expr, restarts[[1L]])
5. └─base (local) doWithOneRestart(return(expr), restart)
[ FAIL 1 | WARN 1 | SKIP 21 | PASS 544 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [11s/18s] OK
- checking HTML version of manual ... [7s/13s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs, 1 NOTE