* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘lame’ ...
** this is package ‘lame’ version ‘1.3.4’
** package ‘lame’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgrNXl8/R.INSTALL267ba937dff4c2/lame/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c Xbeta_cpp.cpp -o Xbeta_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c dynamic_additive_effects.cpp -o dynamic_additive_effects.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c dynamic_beta.cpp -o dynamic_beta.o
dynamic_beta.cpp: In function ‘void accumulate_Omega_h(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::vec&, double, double, bool, bool, bool, arma::mat&, arma::vec&)’:
dynamic_beta.cpp:119:19: warning: unused variable ‘n_obs’ [-Wunused-variable]
119 | const int n_obs = Xdyn_t.n_rows;
| ^~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c dynamic_latent_factors.cpp -o dynamic_latent_factors.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c dynamic_latent_factors_bip.cpp -o dynamic_latent_factors_bip.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c four_cycles.cpp -o four_cycles.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c get_EZ_bip.cpp -o get_EZ_bip.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c get_EZ_cpp.cpp -o get_EZ_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c poisson_functions.cpp -o poisson_functions.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rUV_rep_fc_cpp.cpp -o rUV_rep_fc_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rUV_sym_fc_cpp.cpp -o rUV_sym_fc_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rZ_batch_fc_cpp.cpp -o rZ_batch_fc_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rZ_bin_fused.cpp -o rZ_bin_fused.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rbeta_ab_bip_fc_cpp.cpp -o rbeta_ab_bip_fc_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rbeta_ab_rep_fc_cpp.cpp -o rbeta_ab_rep_fc_cpp.o
rbeta_ab_rep_fc_cpp.cpp: In function ‘arma::vec rmvnorm_cpp(arma::vec, arma::mat)’:
rbeta_ab_rep_fc_cpp.cpp:26:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
26 | for(int i = 0; i < mu.size(); i++) {
| ~~^~~~~~~~~~~
rbeta_ab_rep_fc_cpp.cpp:24:7: warning: unused variable ‘n’ [-Wunused-variable]
24 | int n = 1;
| ^
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rbeta_debug.cpp -o rbeta_debug.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rrho_mh_rep_cpp.cpp -o rrho_mh_rep_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c rs2_rep_fc_cpp.cpp -o rs2_rep_fc_cpp.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic -g -O2 -Wall -pedantic -mtune=native -c uvg_updates_bip.cpp -o uvg_updates_bip.o
uvg_updates_bip.cpp: In function ‘arma::cube sample_U_bip_cpp(const arma::cube&, const arma::cube&, const arma::mat&, const arma::vec&, const arma::vec&)’:
uvg_updates_bip.cpp:24:22: warning: unused variable ‘nB’ [-Wunused-variable]
24 | const unsigned int nB = R.n_cols;
| ^~
uvg_updates_bip.cpp:26:22: warning: unused variable ‘RB’ [-Wunused-variable]
26 | const unsigned int RB = V.n_cols;
| ^~
uvg_updates_bip.cpp: In function ‘arma::cube sample_V_bip_cpp(const arma::cube&, const arma::cube&, const arma::mat&, const arma::vec&, const arma::vec&)’:
uvg_updates_bip.cpp:78:22: warning: unused variable ‘nA’ [-Wunused-variable]
78 | const unsigned int nA = R.n_rows;
| ^~
uvg_updates_bip.cpp:81:22: warning: unused variable ‘RA’ [-Wunused-variable]
81 | const unsigned int RA = U.n_cols;
| ^~
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o lame.so RcppExports.o Xbeta_cpp.o dynamic_additive_effects.o dynamic_beta.o dynamic_latent_factors.o dynamic_latent_factors_bip.o four_cycles.o get_EZ_bip.o get_EZ_cpp.o poisson_functions.o rUV_rep_fc_cpp.o rUV_sym_fc_cpp.o rZ_batch_fc_cpp.o rZ_bin_fused.o rbeta_ab_bip_fc_cpp.o rbeta_ab_rep_fc_cpp.o rbeta_debug.o rrho_mh_rep_cpp.o rs2_rep_fc_cpp.o uvg_updates_bip.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgrNXl8/R.INSTALL267ba937dff4c2/lame/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgrNXl8/R.INSTALL267ba937dff4c2/lame/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgrNXl8/R.INSTALL267ba937dff4c2/lame/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-lame/00new/lame/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lame)