* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘jomo’ ...
** package ‘jomo’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpafG3wA/R.INSTALL2c7e0547b2372b/jomo/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1C.c -o jomo1C.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1ranC.c -o jomo1ranC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1ranhrC.c -o jomo1ranhrC.o
jomo1ranhrC.c: In function ‘jomo1ranhrC’:
jomo1ranhrC.c:629:85: warning: ‘aj’ may be used uninitialized [-Wmaybe-uninitialized]
  629 |                                                         newlogLH=newlogLH*(-0.5)-(aj+JY+1)*log(detom)/2;
      |                                                                                   ~~^~~
jomo1ranhrC.c:19:132: note: ‘aj’ was declared here
   19 | double *cumclus, *allinvomega,gamma,eta,dx,u_new,precision, *invgamma, *invA, *Gammapr, *Gammastar,u_m,con2,deriv2,u_prop, lambda, aj, *listh8, *listomega;
      |                                                                                                                                    ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1ranhrsmcC.c -o jomo1ranhrsmcC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1ransmcC.c -o jomo1ransmcC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo1smcC.c -o jomo1smcC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo2comC.c -o jomo2comC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo2hrC.c -o jomo2hrC.o
jomo2hrC.c: In function ‘jomo2hrC’:
jomo2hrC.c:932:85: warning: ‘aj’ may be used uninitialized [-Wmaybe-uninitialized]
  932 |                                                         newlogLH=newlogLH*(-0.5)-(aj+JY+1)*log(detom)/2;
      |                                                                                   ~~^~~
jomo2hrC.c:19:132: note: ‘aj’ was declared here
   19 | double *cumclus, *allinvomega,gamma,eta,dx,u_new,precision, *invgamma, *invA, *Gammapr, *Gammastar,u_m,con2,deriv2,u_prop, lambda, aj,*missing2, *Y2red, *X2red, *fixomega2;
      |                                                                                                                                    ^~
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo2hrsmcC.c -o jomo2hrsmcC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo2smcC.c -o jomo2smcC.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c jomo_init.c -o jomo_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pdflib.c -o pdflib.o
gcc-13 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wishart.c -o wishart.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o jomo.so jomo1C.o jomo1ranC.o jomo1ranhrC.o jomo1ranhrsmcC.o jomo1ransmcC.o jomo1smcC.o jomo2comC.o jomo2hrC.o jomo2hrsmcC.o jomo2smcC.o jomo_init.o pdflib.o wishart.o -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpafG3wA/R.INSTALL2c7e0547b2372b/jomo/src'
make[1]: Entering directory '/tmp/RtmpafG3wA/R.INSTALL2c7e0547b2372b/jomo/src'
make[1]: Leaving directory '/tmp/RtmpafG3wA/R.INSTALL2c7e0547b2372b/jomo/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-jomo/00new/jomo/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jomo)