- using R version 4.3.1 (2023-06-16)
- using platform: x86_64-pc-linux-gnu (64-bit)
- R was compiled by
gcc-12 (Debian 12.3.0-9) 12.3.0
GNU Fortran (Debian 12.3.0-9) 12.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘immunarch/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘immunarch’ version ‘0.9.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘immunarch’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-12 (Debian 12.3.0-9) 12.3.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [8s/12s] OK
- checking whether the package can be loaded with stated dependencies ... [7s/9s] OK
- checking whether the package can be unloaded cleanly ... [7s/8s] OK
- checking whether the namespace can be loaded with stated dependencies ... [7s/8s] OK
- checking whether the namespace can be unloaded cleanly ... [8s/9s] OK
- checking loading without being on the library search path ... [8s/9s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [63s/75s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [2s/3s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [179s/214s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
repDiversity 10.006 0.159 12.402
vis.immunr_gene_usage 8.715 0.101 9.816
seqCluster 8.293 0.500 9.759
vis.immunr_dynamics 7.777 0.144 9.044
vis_public_frequencies 7.195 0.095 8.313
vis_public_clonotypes 7.134 0.077 7.320
trackClonotypes 6.703 0.191 7.623
vis_textlogo 5.861 0.056 6.861
vis 5.406 0.133 7.252
vis.immunr_public_repertoire 5.032 0.056 6.193
geneUsage 4.248 0.383 5.313
pubRepStatistics 4.410 0.162 5.162
pubRep 4.409 0.099 5.129
repSave 1.965 0.318 5.923
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [12s/15s] OK
- checking PDF version of manual ... [9s/13s] OK
- checking HTML version of manual ... [4s/7s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: OK