• using R version 4.3.1 (2023-06-16)
• using platform: x86_64-pc-linux-gnu (64-bit)
• R was compiled by
      gcc-12 (Debian 12.3.0-9) 12.3.0
      GNU Fortran (Debian 12.3.0-9) 12.3.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘immunarch/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘immunarch’ version ‘0.9.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘immunarch’ can be installed ... OK
  See the install log for details.
• used C++ compiler: ‘g++-12 (Debian 12.3.0-9) 12.3.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/12s] OK
• checking whether the package can be loaded with stated dependencies ... [7s/9s] OK
• checking whether the package can be unloaded cleanly ... [7s/8s] OK
• checking whether the namespace can be loaded with stated dependencies ... [7s/8s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/9s] OK
• checking loading without being on the library search path ... [8s/9s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [63s/75s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/3s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [179s/214s] OK
  Examples with CPU (user + system) or elapsed time > 5s
                                 user system elapsed
  repDiversity 10.006 0.159 12.402
  vis.immunr_gene_usage 8.715 0.101 9.816
  seqCluster 8.293 0.500 9.759
  vis.immunr_dynamics 7.777 0.144 9.044
  vis_public_frequencies 7.195 0.095 8.313
  vis_public_clonotypes 7.134 0.077 7.320
  trackClonotypes 6.703 0.191 7.623
  vis_textlogo 5.861 0.056 6.861
  vis 5.406 0.133 7.252
  vis.immunr_public_repertoire 5.032 0.056 6.193
  geneUsage 4.248 0.383 5.313
  pubRepStatistics 4.410 0.162 5.162
  pubRep 4.409 0.099 5.129
  repSave 1.965 0.318 5.923
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking re-building of vignette outputs ... [12s/15s] OK
• checking PDF version of manual ... [9s/13s] OK
• checking HTML version of manual ... [4s/7s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK