* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘iglm’ ...
** this is package ‘iglm’ version ‘1.2.6’
** package ‘iglm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++-16 (Debian 16.2.0-3) 16.2.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm8jWlr/R.INSTALL1c760bc1f3732/iglm/src'
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c api_usage.cpp -o api_usage.o
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c change_statistics.cpp -o change_statistics.o
In file included from ../inst/include/iglm/attribute_class.h:9,
from ../inst/include/iglm/xz_class.h:6,
from ../inst/include/iglm/xyz_class.h:6,
from ../inst/include/iglm/extension_api.hpp:33,
from change_statistics.cpp:2:
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map(arma::mat, int, bool, std::unordered_map<int, std::unordered_set<int> >&, std::unordered_map<int, std::unordered_set<int> >&)’:
../inst/include/iglm/helper_functions.h:102:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:113:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:130:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
130 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:138:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
138 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map_vec(arma::mat, int, bool, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<char>&)’:
../inst/include/iglm/helper_functions.h:345:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
345 | for (arma::uword i = 1; i <= n_units; i++) {
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:346:32: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
346 | for(arma::uword j = 1; j <= n_units; j++) {
| ~~^~~~~~~~~~
change_statistics.cpp: In function ‘bool has_alternative_h_to_j(int, int, int, const XYZ_class&, const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&)’:
change_statistics.cpp:2218:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int, std::allocator<int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2218 | if (h >= object.z_network.adj_list.size()) return false;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
change_statistics.cpp: In function ‘bool has_alternative_i_to_h(int, int, int, const XYZ_class&, const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&)’:
change_statistics.cpp:2239:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<int, std::allocator<int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2239 | if (h >= object.z_network.adj_list_in.size()) return false;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
change_statistics.cpp: In lambda function:
change_statistics.cpp:2257:14: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<std::vector<int, std::allocator<int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2257 | (unit_i >= object.z_network.adj_list_in.size() ||
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
change_statistics.cpp:2258:14: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<std::vector<int, std::allocator<int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
2258 | unit_j >= object.z_network.adj_list_in.size()))
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c extension_api.cpp -o extension_api.o
In file included from ../inst/include/iglm/attribute_class.h:9,
from ../inst/include/iglm/xz_class.h:6,
from ../inst/include/iglm/xyz_class.h:6,
from ../inst/include/iglm/extension_api.hpp:33,
from extension_api.cpp:3:
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map(arma::mat, int, bool, std::unordered_map<int, std::unordered_set<int> >&, std::unordered_map<int, std::unordered_set<int> >&)’:
../inst/include/iglm/helper_functions.h:102:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:113:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:130:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
130 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:138:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
138 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map_vec(arma::mat, int, bool, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<char>&)’:
../inst/include/iglm/helper_functions.h:345:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
345 | for (arma::uword i = 1; i <= n_units; i++) {
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:346:32: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
346 | for(arma::uword j = 1; j <= n_units; j++) {
| ~~^~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c iglm_classes.cpp -o iglm_classes.o
In file included from ../inst/include/iglm/attribute_class.h:9,
from iglm_classes.cpp:2:
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map(arma::mat, int, bool, std::unordered_map<int, std::unordered_set<int> >&, std::unordered_map<int, std::unordered_set<int> >&)’:
../inst/include/iglm/helper_functions.h:102:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:113:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:130:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
130 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:138:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
138 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map_vec(arma::mat, int, bool, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<char>&)’:
../inst/include/iglm/helper_functions.h:345:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
345 | for (arma::uword i = 1; i <= n_units; i++) {
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:346:32: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
346 | for(arma::uword j = 1; j <= n_units; j++) {
| ~~^~~~~~~~~~
g++-16 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I../inst/include -DARMA_64BIT_WORD -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DIGLM_COMPILING_IGLM -fpic -g -O2 -Wall -pedantic -mtune=native -c xyz_sampling.cpp -o xyz_sampling.o
In file included from ../inst/include/iglm/attribute_class.h:9,
from ../inst/include/iglm/xz_class.h:6,
from ../inst/include/iglm/xyz_class.h:6,
from xyz_sampling.cpp:8:
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map(arma::mat, int, bool, std::unordered_map<int, std::unordered_set<int> >&, std::unordered_map<int, std::unordered_set<int> >&)’:
../inst/include/iglm/helper_functions.h:102:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
102 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:113:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
113 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:130:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
130 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:138:33: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
138 | for (arma::uword i = 1; i <= n_units; i++){
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h: In function ‘void mat_to_map_vec(arma::mat, int, bool, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<std::vector<int, std::allocator<int> > >&, std::vector<char>&)’:
../inst/include/iglm/helper_functions.h:345:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
345 | for (arma::uword i = 1; i <= n_units; i++) {
| ~~^~~~~~~~~~
../inst/include/iglm/helper_functions.h:346:32: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
346 | for(arma::uword j = 1; j <= n_units; j++) {
| ~~^~~~~~~~~~
xyz_sampling.cpp: In function ‘std::tuple<arma::Col<double>, arma::Col<double>, arma::Mat<double>, arma::Mat<double> > cond_estimation_degrees_pl(arma::vec, arma::uvec&, arma::uvec&, arma::uvec&, bool, std::tuple<arma::Mat<double>, arma::Col<double> >&, int, double, arma::vec, double, arma::mat, int, bool&, bool)’:
xyz_sampling.cpp:2185:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2185 | if(j_vec.at(i) != n_units){
| ~~~~~~~~~~~~^~~~~~~~~~
xyz_sampling.cpp: In function ‘std::tuple<arma::Col<double>, arma::Col<double>, arma::Mat<double>, arma::Mat<double> > cond_estimation_degrees_pl_accelerated(arma::vec, arma::uvec&, arma::uvec&, arma::uvec&, bool, std::tuple<arma::Mat<double>, arma::Col<double> >&, int, double, arma::vec, double, arma::mat, bool&, arma::vec&, arma::vec&, arma::mat&, int, bool, bool)’:
xyz_sampling.cpp:2332:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2332 | if(j_vec.at(i) != n_units){
| ~~~~~~~~~~~~^~~~~~~~~~
g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o iglm.so RcppExports.o api_usage.o change_statistics.o extension_api.o iglm_classes.o xyz_sampling.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm8jWlr/R.INSTALL1c760bc1f3732/iglm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm8jWlr/R.INSTALL1c760bc1f3732/iglm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm8jWlr/R.INSTALL1c760bc1f3732/iglm/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-iglm/00new/iglm/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (iglm)