• using R version 4.6.0 (2026-04-24)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-1) 16.1.0     GNU Fortran (Debian 16.1.0-1) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-06-13 13:32:47 UTC
• checking for file ‘hyper2/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hyper2’ version ‘3.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘hyper2’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-1) 16.1.0’
• used C++ compiler: ‘g++-16 (Debian 16.1.0-1) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/23s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [3s/3s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [70s/90s] OK Examples with CPU (user + system) or elapsed time > 5s                  user system elapsed ordertable2supp 6.217 0.000 6.772 zipf 4.542 0.015 5.767 rhyper3 3.853 0.000 5.545
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [37s/46s] OK   Running ‘testthat.R’ [36s/46s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [149s/192s] WARNING Error(s) in re-building vignettes:   ... --- re-building ‘dirichlet.Rmd’ using rmarkdown --- finished re-building ‘dirichlet.Rmd’ --- re-building ‘hyper3.Rmd’ using rmarkdown --- finished re-building ‘hyper3.Rmd’ --- re-building ‘hyper3_creation.Rmd’ using rmarkdown --- finished re-building ‘hyper3_creation.Rmd’ --- re-building ‘icons.Rmd’ using rmarkdown --- finished re-building ‘icons.Rmd’ --- re-building ‘ordertrans.Rmd’ using rmarkdown --- finished re-building ‘ordertrans.Rmd’ --- re-building ‘zeropower.Rmd’ using rmarkdown --- finished re-building ‘zeropower.Rmd’ --- re-building ‘hyper2.Rnw’ using Sweave Warning in print.hyper2(res$value) : powers have nonzero sum Warning in print.hyper2(res$value) : powers have nonzero sum Warning in print.hyper2(res$value) : powers have nonzero sum Error: processing vignette 'hyper2.Rnw' failed with diagnostics: Running 'texi2dvi' on 'hyper2.tex' failed. LaTeX errors: ! Undefined control sequence. <argument> cite.\@citeb                         \@extra@b@citeb l.97 \begin{document}                       ! Emergency stop. <argument> cite.\@citeb                         \@extra@b@citeb l.97 \begin{document}                       ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘hyper2.Rnw’ --- re-building ‘integration.Rnw’ using Sweave --- finished re-building ‘integration.Rnw’ SUMMARY: processing the following file failed:   ‘hyper2.Rnw’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [11s/15s] OK
• checking HTML version of manual ... [10s/16s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING