- using R version 4.5.2 (2025-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-10) 14.3.0
GNU Fortran (Debian 14.3.0-10) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘hockeystick/DESCRIPTION’ ... OK
- this is package ‘hockeystick’ version ‘0.8.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘hockeystick’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/4s] OK
- checking whether the package can be unloaded cleanly ... [2s/3s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
- checking loading without being on the library search path ... [3s/4s] OK
- checking whether startup messages can be suppressed ... [3s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [15s/20s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [1s/1s] OK
Running ‘spelling.R’ [0s/0s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [32s/59s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘usinghockeystick.qmd’ using html
[31m
processing file: usinghockeystick.qmd
[39m [31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv'
[39m [31mContent type 'text/csv' length 38335 bytes (37 KB)
========== [39m [31m========== [39m [31m============================== [39m [31m
downloaded 37 KB
[39m [31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv'
[39m [31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m=
downloaded 13.7 MB
[39m [31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv'
[39m [31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m=
downloaded 13.7 MB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12795 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv'
[39m [31mContent type 'text/csv' [39m [31m length 38335 bytes (37 KB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m=================================
downloaded 37 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' [39m [31m length 12795 bytes (12 KB)
[39m [31m= [39m [31m= [39m [31m================================================
downloaded 12 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' [39m [31m length 12795 bytes (12 KB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m=============== [39m [31m==================== [39m [31m
downloaded 12 KB
[39m [31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv'
[39m [31mContent type 'text/csv' length 12795 bytes (12 KB)
============================== [39m [31m====================
downloaded 12 KB
[39m [31mtrying URL 'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv'
[39m [31mContent type 'text/csv' [39m [31m length 38739 bytes (37 KB)
[39m [31m===================== [39m [31m=============================
downloaded 37 KB
[39m [31mtrying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327'
[39m [31mdownloaded 379 KB
[39m [31mtrying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.x [39m [31mlsx'
[39m [31mContent type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' [39m [31m length 130067 bytes (127 KB)
[39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m= [39m [31m====== [39m [31m====== [39m [31m================ [39m [31m========= [39m [31m=======
downloaded 127 KB
[39m [31mtrying URL 'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.x [39m [31mlsx'
[39m [31mContent type 'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length 130067 bytes (127 KB)
=== [39m [31m=== [39m [31m====== [39m [31m====== [39m [31m================ [39m [31m========= [39m [31m=======
downloaded 127 KB
[39m [31mError in open.connection(x, "rb") : cannot open the connection
Calls: .main ... eval -> get_hurricanes -> read_html -> read_html [39m [31m.default
[39m [31m
Quitting from usinghockeystick.qmd:92-98 [hurdat]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m [31m~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─hock [39m [31meystick::get_hurricanes()
2. ├─xml2::read_html(file_url)
3. └─xml2:::read_html.default(file_url)
4. ├─ [39m [31mbase::suppressWarnings(...)
5. │ └─base::withCallingHandlers(...)
6. ├─xml2::read_xml(x, encoding = encodi [39m [31mng, ..., as_html = TRUE, options = options)
7. └─xml2:::read_xml.character(...)
8. └─xml2:::read_xml.conne [39m [31mction(...)
9. ├─base::open(x, "rb")
10. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m [31m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[39m [31mExecution halted
[39m [33mWARN: Error encountered when rendering files [39m
Error: processing vignette 'usinghockeystick.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error in `quarto_render()`:
✖ Error returned by quarto CLI.
-----------------------------
processing file: usinghockeystick.qmd
[31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' [39m
[31mContent type 'text/csv' length 38335 bytes (37 KB) [39m
========== [31m======================================== [39m
downloaded 37 KB
[31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' [39m
[31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) [39m
[31m================================================== [39m
downloaded 13.7 MB
[31mtrying URL 'https://github.com/owid/co2-data/raw/master/owid-co2-data.csv' [39m
[31mContent type 'text/plain; charset=utf-8' length 14331624 bytes (13.7 MB) [39m
[31m================================================== [39m
downloaded 13.7 MB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12795 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL 'https://gml.noaa.gov/webdata/ccgg/trends/co2/co2_mm_mlo.csv' [39m
[31mContent type 'text/csv' length 38335 bytes (37 KB) [39m
[31m================================================== [39m
downloaded 37 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12795 bytes (12 KB) [39m
[31m================================================== [39m
downloaded 12 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12795 bytes (12 KB) [39m
[31m================================================== [39m
downloaded 12 KB
[31mtrying URL 'https://data.giss.nasa.gov/gistemp/tabledata_v4/GLB.Ts+dSST.csv' [39m
[31mContent type 'text/csv' length 12795 bytes (12 KB) [39m
============================== [31m==================== [39m
downloaded 12 KB
[31mtrying URL [39m
[31m'https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/slr/slr_sla_gbl_free_ref_90.csv' [39m
[31mContent type 'text/csv' length 38739 bytes (37 KB) [39m
[31m================================================== [39m
downloaded 37 KB
[31mtrying URL 'https://research.csiro.au/slrwavescoast/?ddownload=327' [39m
[31mdownloaded 379 KB [39m
[31mtrying URL [39m
[31m'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' [39m
[31mContent type [39m
[31m'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length [39m
[31m130067 bytes (127 KB) [39m
[31m================================================== [39m
downloaded 127 KB
[31mtrying URL [39m
[31m'https://noaadata.apps.nsidc.org/NOAA/G02135/seaice_analysis/Sea_Ice_Index_Monthly_Data_with_Statistics_G02135_v4.0.xlsx' [39m
[31mContent type [39m
[31m'application/vnd.openxmlformats-officedocument.spreadsheetml.sheet' length [39m
[31m130067 bytes (127 KB) [39m
=== [31m=============================================== [39m
downloaded 127 KB
[31mError in open.connection(x, "rb") : cannot open the connection [39m
Calls: .main ... eval -> get_hurricanes -> read_html -> read_html [31m.default [39m
Quitting from usinghockeystick.qmd:92-98 [hurdat]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31m~~~~~~~~~ [39m
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
▆
1. └─hock [31meystick::get_hurricanes() [39m
2. ├─xml2::read_html(file_url)
3. └─xml2:::read_html.default(file_url)
4. ├─ [31mbase::suppressWarnings(...) [39m
5. │ └─base::withCallingHandlers(...)
6. ├─xml2::read_xml(x, encoding = encodi [31mng, ..., as_html = TRUE, options = [39m
[31moptions) [39m
7. └─xml2:::read_xml.character(...)
8. └─xml2:::read_xml.conne [31mction(...) [39m
9. ├─base::open(x, "rb")
10. └─base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [31m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [39m
[31mExecution halted [39m
[33mWARN: Error encountered when rendering files [39m
Caused by error:
! System command 'quarto' failed
--- failed re-building ‘usinghockeystick.qmd’
SUMMARY: processing the following file failed:
‘usinghockeystick.qmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR