* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘harmony’ ...
** this is package ‘harmony’ version ‘2.0.3’
** package ‘harmony’ successfully unpacked and MD5 sums checked
** using staged installation
checking for single-precision BLAS procedures (sdot_, sgemm_)...
  single-precision BLAS NOT found
checking for single-precision LAPACK procedures (sgesv_)...
  single-precision LAPACK found
checking for double-precision BLAS procedures (ddot_, dgemm_)...
  double-precision BLAS NOT found
checking for double-precision LAPACK procedures (dgesv_)...
  double-precision LAPACK found
  single-precision routines not fully available -- using double scalar
  disabling BLAS for Armadillo (double-precision routines absent)
configure: src/Makevars written
  PKG_CXXFLAGS = -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS
  PKG_LIBS     = -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
** libs
using C++ compiler: ‘g++-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVYvVAf/R.INSTALL2131753a696429/harmony/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c harmony.cpp -o harmony.o
harmony.cpp: In member function ‘void harmony::moe_correct_ridge_cpp()’:
harmony.cpp:374:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  374 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
harmony.cpp:395:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  395 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c timer.cpp -o timer.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppProgress/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils.cpp -o utils.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o harmony.so RcppExports.o harmony.o timer.o utils.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVYvVAf/R.INSTALL2131753a696429/harmony/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVYvVAf/R.INSTALL2131753a696429/harmony/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVYvVAf/R.INSTALL2131753a696429/harmony/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-harmony/00new/harmony/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (harmony)