* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-13 (Debian 13.2.0-25) 13.2.0 GNU Fortran (Debian 13.2.0-25) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘gghighlight/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gghighlight’ version ‘0.4.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘gghighlight’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/gghighlight-00install.html' for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [1s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s/13s] OK * checking Rd files ... [0s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/4s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [11s/14s] OK Running ‘testthat.R’ [11s/13s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [29s/38s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘gghighlight.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/ggplot2-simple-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 139035 bytes Input file size = 139305 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 125003 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 125003 Output IDAT size = 125003 bytes (14032 bytes decrease) Output file size = 125081 bytes (14224 bytes = 10.21% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/ggplot2-filter-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41510 bytes Input file size = 41648 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38835 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38835 Output IDAT size = 38835 bytes (2675 bytes decrease) Output file size = 38913 bytes (2735 bytes = 6.57% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-simple-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95814 bytes Input file size = 96024 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76626 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76626 Output IDAT size = 76626 bytes (19188 bytes decrease) Output file size = 76704 bytes (19320 bytes = 20.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-two-conds-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 101937 bytes Input file size = 102159 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82104 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82104 Output IDAT size = 82104 bytes (19833 bytes decrease) Output file size = 82182 bytes (19977 bytes = 19.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-theme-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 113668 bytes Input file size = 113902 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89116 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89116 Output IDAT size = 89116 bytes (24552 bytes decrease) Output file size = 89194 bytes (24708 bytes = 21.69% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-facet-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 116714 bytes Input file size = 116960 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88627 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88627 Output IDAT size = 88627 bytes (28087 bytes decrease) Output file size = 88705 bytes (28255 bytes = 24.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/bar-1.png 576x384 pixels, 8 bits/pixel, 239 colors in palette Input IDAT size = 5152 bytes Input file size = 5959 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4199 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4189 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4189 Output IDAT size = 4189 bytes (963 bytes decrease) Output file size = 4996 bytes (963 bytes = 16.16% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/bar-wrap-1.png 576x384 pixels, 8 bits/pixel, 255 colors in palette Input IDAT size = 8020 bytes Input file size = 8875 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7194 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7194 Output IDAT size = 7194 bytes (826 bytes decrease) Output file size = 8049 bytes (826 bytes = 9.31% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/point-1.png 576x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 7147 bytes Input file size = 8005 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6155 Output IDAT size = 6155 bytes (992 bytes decrease) Output file size = 6233 bytes (1772 bytes = 22.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/numeric-highlight-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 109068 bytes Input file size = 109302 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89225 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89225 Output IDAT size = 89225 bytes (19843 bytes decrease) Output file size = 89303 bytes (19999 bytes = 18.30% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 88515 bytes Input file size = 88713 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71619 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71619 Output IDAT size = 71619 bytes (16896 bytes decrease) Output file size = 71697 bytes (17016 bytes = 19.18% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels2-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95197 bytes Input file size = 95407 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76149 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76149 Output IDAT size = 76149 bytes (19048 bytes decrease) Output file size = 76227 bytes (19180 bytes = 20.10% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels3-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 18143 bytes Input file size = 18245 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15409 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15409 Output IDAT size = 15409 bytes (2734 bytes decrease) Output file size = 15487 bytes (2758 bytes = 15.12% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-params-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 90725 bytes Input file size = 90935 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73262 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73262 Output IDAT size = 73262 bytes (17463 bytes decrease) Output file size = 73340 bytes (17595 bytes = 19.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-params-null-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 140957 bytes Input file size = 141239 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127412 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127412 Output IDAT size = 127412 bytes (13545 bytes decrease) Output file size = 127490 bytes (13749 bytes = 9.73% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/keep_scales-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14185 bytes Input file size = 14275 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11826 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11826 Output IDAT size = 11826 bytes (2359 bytes decrease) Output file size = 11904 bytes (2371 bytes = 16.61% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/keep_scales-2.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16973 bytes Input file size = 17075 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14000 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14000 Output IDAT size = 14000 bytes (2973 bytes decrease) Output file size = 14078 bytes (2997 bytes = 17.55% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/calculate_per_facet-1.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16988 bytes Input file size = 17090 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15387 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15387 Output IDAT size = 15387 bytes (1601 bytes decrease) Output file size = 15465 bytes (1625 bytes = 9.51% decrease) ** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/calculate_per_facet-2.png 576x384 pixels, 3x8 bits/pixel, RGB Input IDAT size = 14571 bytes Input file size = 14661 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13062 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13062 Output IDAT size = 13062 bytes (1509 bytes decrease) Output file size = 13140 bytes (1521 bytes = 10.37% decrease) Quitting from lines 291-308 [line_label_type] (gghighlight.Rmd) Error: processing vignette 'gghighlight.Rmd' failed with diagnostics: Problem while converting geom to grob. ℹ Error occurred in the 2nd layer. Caused by error in `txt$shape[, shape_vars]`: ! Can't subset columns that don't exist. ✖ Column `x_midpoint` doesn't exist. --- failed re-building ‘gghighlight.Rmd’ SUMMARY: processing the following file failed: ‘gghighlight.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [5s/7s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR