- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-25) 13.2.0
GNU Fortran (Debian 13.2.0-25) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘gghighlight/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘gghighlight’ version ‘0.4.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gghighlight’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [10s/12s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/5s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [11s/13s] OK
Running ‘testthat.R’ [11s/13s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [29s/38s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘gghighlight.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/ggplot2-simple-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 139035 bytes
Input file size = 139305 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 125003
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 125003
Output IDAT size = 125003 bytes (14032 bytes decrease)
Output file size = 125081 bytes (14224 bytes = 10.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/ggplot2-filter-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 41510 bytes
Input file size = 41648 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38835
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 38835
Output IDAT size = 38835 bytes (2675 bytes decrease)
Output file size = 38913 bytes (2735 bytes = 6.57% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-simple-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 95814 bytes
Input file size = 96024 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76626
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76626
Output IDAT size = 76626 bytes (19188 bytes decrease)
Output file size = 76704 bytes (19320 bytes = 20.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-two-conds-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 101937 bytes
Input file size = 102159 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82104
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 82104
Output IDAT size = 82104 bytes (19833 bytes decrease)
Output file size = 82182 bytes (19977 bytes = 19.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-theme-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 113668 bytes
Input file size = 113902 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89116
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89116
Output IDAT size = 89116 bytes (24552 bytes decrease)
Output file size = 89194 bytes (24708 bytes = 21.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-facet-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 116714 bytes
Input file size = 116960 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88627
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 88627
Output IDAT size = 88627 bytes (28087 bytes decrease)
Output file size = 88705 bytes (28255 bytes = 24.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/bar-1.png
576x384 pixels, 8 bits/pixel, 239 colors in palette
Input IDAT size = 5152 bytes
Input file size = 5959 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4199
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4189
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4189
Output IDAT size = 4189 bytes (963 bytes decrease)
Output file size = 4996 bytes (963 bytes = 16.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/bar-wrap-1.png
576x384 pixels, 8 bits/pixel, 255 colors in palette
Input IDAT size = 8020 bytes
Input file size = 8875 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7194
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7194
Output IDAT size = 7194 bytes (826 bytes decrease)
Output file size = 8049 bytes (826 bytes = 9.31% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/point-1.png
576x384 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7147 bytes
Input file size = 8005 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6155
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6155
Output IDAT size = 6155 bytes (992 bytes decrease)
Output file size = 6233 bytes (1772 bytes = 22.14% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/numeric-highlight-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 109068 bytes
Input file size = 109302 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89225
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 89225
Output IDAT size = 89225 bytes (19843 bytes decrease)
Output file size = 89303 bytes (19999 bytes = 18.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 88515 bytes
Input file size = 88713 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71619
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 71619
Output IDAT size = 71619 bytes (16896 bytes decrease)
Output file size = 71697 bytes (17016 bytes = 19.18% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels2-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 95197 bytes
Input file size = 95407 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76149
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76149
Output IDAT size = 76149 bytes (19048 bytes decrease)
Output file size = 76227 bytes (19180 bytes = 20.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/labels3-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18143 bytes
Input file size = 18245 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15409
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15409
Output IDAT size = 15409 bytes (2734 bytes decrease)
Output file size = 15487 bytes (2758 bytes = 15.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-params-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 90725 bytes
Input file size = 90935 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73262
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 73262
Output IDAT size = 73262 bytes (17463 bytes decrease)
Output file size = 73340 bytes (17595 bytes = 19.35% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/gghighlight-params-null-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 140957 bytes
Input file size = 141239 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127412
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 127412
Output IDAT size = 127412 bytes (13545 bytes decrease)
Output file size = 127490 bytes (13749 bytes = 9.73% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/keep_scales-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14185 bytes
Input file size = 14275 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11826
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11826
Output IDAT size = 11826 bytes (2359 bytes decrease)
Output file size = 11904 bytes (2371 bytes = 16.61% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/keep_scales-2.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16973 bytes
Input file size = 17075 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14000
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14000
Output IDAT size = 14000 bytes (2973 bytes decrease)
Output file size = 14078 bytes (2997 bytes = 17.55% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/calculate_per_facet-1.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 16988 bytes
Input file size = 17090 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15387
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15387
Output IDAT size = 15387 bytes (1601 bytes decrease)
Output file size = 15465 bytes (1625 bytes = 9.51% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/gghighlight.Rcheck/vign_test/gghighlight/vignettes/gghighlight_files/figure-html/calculate_per_facet-2.png
576x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14571 bytes
Input file size = 14661 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13062
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13062
Output IDAT size = 13062 bytes (1509 bytes decrease)
Output file size = 13140 bytes (1521 bytes = 10.37% decrease)
Quitting from lines 291-308 [line_label_type] (gghighlight.Rmd)
Error: processing vignette 'gghighlight.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `txt$shape[, shape_vars]`:
! Can't subset columns that don't exist.
✖ Column `x_midpoint` doesn't exist.
--- failed re-building ‘gghighlight.Rmd’
SUMMARY: processing the following file failed:
‘gghighlight.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [0s/0s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR