• using R version 4.6.1 (2026-06-24)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-2) 16.1.0     GNU Fortran (Debian 16.1.0-2) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-25 13:07:54 UTC
• checking for file ‘gggenomes/DESCRIPTION’ ... OK
• this is package ‘gggenomes’ version ‘1.1.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gggenomes’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/24s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [127s/152s] OK Examples with CPU (user + system) or elapsed time > 5s                   user system elapsed focus 10.929 0.167 11.925 gggenomes 9.318 0.104 11.793 add_tracks 9.062 0.310 12.385 geom_gene 8.052 0.128 9.410 align 8.028 0.052 10.631 geom_link 7.533 0.083 8.518 read_alitv 6.247 0.204 7.862 pick 6.171 0.171 6.349 scale_x_bp 5.449 0.085 6.877 flip 5.493 0.040 6.378 position_strand 5.308 0.108 6.360 geom_bin_label 4.987 0.140 5.755 geom_seq 4.856 0.060 5.716 shift 4.360 0.044 5.814 geom_wiggle 3.581 0.028 5.143
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/5s] OK   Running ‘testthat.R’ [3s/4s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [46s/64s] OK
• checking PDF version of manual ... [10s/14s] OK
• checking HTML version of manual ... [9s/15s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: OK