- using R version 4.6.1 (2026-06-24)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-2) 16.1.0
GNU Fortran (Debian 16.1.0-2) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-18 13:01:39 UTC
- checking for file ‘gggda/DESCRIPTION’ ... OK
- this is package ‘gggda’ version ‘0.1.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘gggda’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/14s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [22s/26s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
stat_depth 4.597 0.063 5.082
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [17s/21s] ERROR
Running ‘testthat.R’ [16s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(gggda)
Loading required package: ggplot2
>
> test_check("gggda")
Saving _problems/test-stat-spantree-33.R
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 117 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• {ade4} is not installed (2): 'test-stat-spantree.r:11:3',
'test-stat-spantree.r:41:3'
• {vegan} is not installed (1): 'test-stat-spantree.r:36:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-stat-spantree.r:33:3'): {mlpack} engine works with `StatSpantree` ──
Expected `nrow(layer_data(p))` to equal `n_mst`.
Differences:
1/1 mismatches
[1] 0 - 9 == -9
[ FAIL 1 | WARN 1 | SKIP 3 | PASS 117 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [8s/8s] OK
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [7s/9s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR