* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘gfilogisreg’ ...
** package ‘gfilogisreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-25) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/Rtmp7k1zeP/R.INSTALL367e226bd8dd6/gfilogisreg/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/roptim/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gfilogisreg.cpp -o gfilogisreg.o
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/cstdfloat.hpp:27,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/number.hpp:12,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/multiprecision/gmp.hpp:11,
                 from gfilogisreg.cpp:1:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
  714 |                else if (x == BOOST_FLOAT128_C(0.0))
      |                ^~~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
  717 |                if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
      |                ^~
gfilogisreg.cpp: In function ‘Rcpp::CharacterVector vector2q(arma::colvec&)’:
gfilogisreg.cpp:324:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
  324 |   for(auto i = 0; i < x.size(); i++) {
      |                   ~~^~~~~~~~~~
gfilogisreg.cpp: In function ‘Rcpp::List loop1(Rcpp::List, Rcpp::List, int, const arma::colvec&)’:
gfilogisreg.cpp:367:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  367 |     for(auto i = 0; i < N; i++) {
      |                     ~~^~~
gfilogisreg.cpp:376:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
  376 |     for(auto i = 0; i < N; i++) {
      |                     ~~^~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o gfilogisreg.so RcppExports.o gfilogisreg.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgmp -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp7k1zeP/R.INSTALL367e226bd8dd6/gfilogisreg/src'
make[1]: Entering directory '/tmp/Rtmp7k1zeP/R.INSTALL367e226bd8dd6/gfilogisreg/src'
make[1]: Leaving directory '/tmp/Rtmp7k1zeP/R.INSTALL367e226bd8dd6/gfilogisreg/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-gfilogisreg/00new/gfilogisreg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘gfilogisreg’ as ‘gfilogisreg_1.0.3_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (gfilogisreg)