* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘funMoDisco’ ... ** this is package ‘funMoDisco’ version ‘1.0.0’ ** package ‘funMoDisco’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’ using C++20 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src' g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c DissimilarityH1.cpp -o DissimilarityH1.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c DissimilarityL2.cpp -o DissimilarityL2.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c MotifH1.cpp -o MotifH1.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c MotifL2.cpp -o MotifL2.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c MotifSobol.cpp -o MotifSobol.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c Parameters.cpp -o Parameters.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c PerformanceH1.cpp -o PerformanceH1.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c PerformanceL2.cpp -o PerformanceL2.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c SobolDiss.cpp -o SobolDiss.o SobolDiss.cpp: In member function ‘virtual double SobolDiss::distance(const KMA::matrix&, const KMA::matrix&) const’: SobolDiss.cpp:16:17: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = subview<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations] 16 | if(is_finite(y.row(i))){n_rows += 1;} | ~~~~~~~~~^~~~~~~~~~ In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32, from ./include/TypeTraits.hpp:3, from ./include/Dissimilarity.hpp:3, from SobolDiss.cpp:1: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here 181 | is_finite(const Base<typename T1::elem_type,T1>& X) | ^~~~~~~~~ g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I./include -fpic -g -O2 -Wall -pedantic -mtune=native -c probKMAImpl.cpp -o probKMAImpl.o probKMAImpl.cpp: In member function ‘Rcpp::List ProbKMA::_probKMAImp::compute_silhouette(bool)’: probKMAImpl.cpp:749:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations] 749 | if(!arma::is_finite(sil)) | ~~~~~~~~~~~~~~~^~~~~ In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32, from ./include/ProbKMA.hpp:4, from probKMAImpl.cpp:1: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here 167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr) | ^~~~~~~~~ g++-14 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o funMoDisco.so DissimilarityH1.o DissimilarityL2.o MotifH1.o MotifL2.o MotifSobol.o Parameters.o PerformanceH1.o PerformanceL2.o RcppExports.o SobolDiss.o probKMAImpl.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-funMoDisco/00new/funMoDisco/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (funMoDisco)