Install log for 'funMoDisco'

* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘funMoDisco’ ...
** this is package ‘funMoDisco’ version ‘1.0.0’
** package ‘funMoDisco’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
using C++20
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src'
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DissimilarityH1.cpp -o DissimilarityH1.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DissimilarityL2.cpp -o DissimilarityL2.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MotifH1.cpp -o MotifH1.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MotifL2.cpp -o MotifL2.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MotifSobol.cpp -o MotifSobol.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Parameters.cpp -o Parameters.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PerformanceH1.cpp -o PerformanceH1.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PerformanceL2.cpp -o PerformanceL2.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SobolDiss.cpp -o SobolDiss.o
SobolDiss.cpp: In member function ‘virtual double SobolDiss::distance(const KMA::matrix&, const KMA::matrix&) const’:
SobolDiss.cpp:16:17: warning: ‘bool arma::is_finite(const Base<typename T1::elem_type, T1>&) [with T1 = subview<double>; typename T1::elem_type = double]’ is deprecated: change arma::is_finite(X) to X.is_finite() [-Wdeprecated-declarations]
   16 |     if(is_finite(y.row(i))){n_rows += 1;}
      |        ~~~~~~~~~^~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/TypeTraits.hpp:3,
                 from ./include/Dissimilarity.hpp:3,
                 from SobolDiss.cpp:1:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:181:1: note: declared here
  181 | is_finite(const Base<typename T1::elem_type,T1>& X)
      | ^~~~~~~~~
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I./include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c probKMAImpl.cpp -o probKMAImpl.o
probKMAImpl.cpp: In member function ‘Rcpp::List ProbKMA::_probKMAImp::compute_silhouette(bool)’:
probKMAImpl.cpp:749:28: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  749 |         if(!arma::is_finite(sil))
      |             ~~~~~~~~~~~~~~~^~~~~
In file included from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ./include/ProbKMA.hpp:4,
                 from probKMAImpl.cpp:1:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++-14 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o funMoDisco.so DissimilarityH1.o DissimilarityL2.o MotifH1.o MotifL2.o MotifSobol.o Parameters.o PerformanceH1.o PerformanceL2.o RcppExports.o SobolDiss.o probKMAImpl.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEm4bIF/R.INSTALL17d8ab257d9e08/funMoDisco/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-funMoDisco/00new/funMoDisco/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (funMoDisco)