- using R version 4.6.1 (2026-06-24)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-2) 16.1.0
GNU Fortran (Debian 16.1.0-2) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-11 11:51:18 UTC
- checking for file ‘equatiomatic/DESCRIPTION’ ... OK
- this is package ‘equatiomatic’ version ‘0.4.8’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘equatiomatic’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/16s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [118s/97s] ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [118s/96s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(equatiomatic)
Attaching package: 'equatiomatic'
The following object is masked from 'package:datasets':
penguins
>
> test_check("equatiomatic")
Starting 2 test processes.
> test-clm.R: This link function is not presently supported; using an identity
> test-clm.R: function instead
> test-glmerMod.R: Loading required package: Matrix
> test-glm.R: This distribution is not presently supported; the distribution assumption
> test-glm.R: will not be displayed
> test-lmerMod.R: Loading required package: Matrix
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
Saving _problems/test-glmerMod-117.R
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-polr.R:
> test-polr.R: Re-fitting to get Hessian
> test-polr.R:
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
> test-lmerMod.R: boundary (singular) fit: see help('isSingular')
[ FAIL 1 | WARN 0 | SKIP 63 | PASS 34 ]
══ Skipped tests (63) ══════════════════════════════════════════════════════════
• On CRAN (61): 'test-clm.R:1:1', 'test-clm.R:22:1', 'test-clm.R:51:1',
'test-clm.R:79:1', 'test-clm.R:107:1', 'test-fontsize.R:1:1',
'test-fontsize.R:8:1', 'test-fontsize.R:15:1', 'test-forecast-arima.R:4:1',
'test-forecast-arima.R:22:1', 'test-glm.R:1:1', 'test-glm.R:82:1',
'test-glm.R:111:1', 'test-glm.R:141:1', 'test-glm.R:163:1',
'test-glm.R:191:1', 'test-glm.R:209:1', 'test-glm.R:239:1',
'test-glm.R:285:1', 'test-lm.R:1:1', 'test-lm.R:15:1', 'test-lm.R:20:1',
'test-lm.R:46:1', 'test-lm.R:66:1', 'test-lm.R:79:1', 'test-lm.R:93:1',
'test-lm.R:98:1', 'test-lm.R:114:1', 'test-lm.R:125:1', 'test-lm.R:143:1',
'test-glmerMod.R:18:1', 'test-glmerMod.R:65:1', 'test-glmerMod.R:88:1',
'test-glmerMod.R:123:1', 'test-polr.R:1:1', 'test-polr.R:22:1',
'test-polr.R:54:1', 'test-polr.R:79:1', 'test-polr.R:110:1',
'test-se-subscripts.R:2:1', 'test-se-subscripts.R:31:1',
'test-se-subscripts.R:82:1', 'test-se-subscripts.R:129:1',
'test-se-subscripts.R:172:1', 'test-wrapping-formatting.R:1:1',
'test-wrapping-formatting.R:15:1', 'test-lmerMod.R:12:1',
'test-lmerMod.R:83:1', 'test-lmerMod.R:101:1', 'test-lmerMod.R:120:1',
'test-lmerMod.R:142:1', 'test-lmerMod.R:165:1', 'test-lmerMod.R:171:1',
'test-lmerMod.R:184:1', 'test-lmerMod.R:198:1', 'test-lmerMod.R:212:1',
'test-lmerMod.R:223:1', 'test-lmerMod.R:267:1', 'test-lmerMod.R:317:1',
'test-lmerMod.R:360:1', 'test-lmerMod.R:388:1'
• Skipping (2): 'test-lmerMod.R:419:3', 'test-lmerMod.R:435:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-glmerMod.R:112:3'): Poisson regression models with an offset work ──
<Rcpp::exception/C++Error/error/condition>
Error: Downdated VtV is not positive definite
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-glmerMod.R:112:3
2. │ └─base::withCallingHandlers(...)
3. └─lme4::glmer(...)
4. └─lme4::optimizeGlmer(...)
5. └─lme4:::optwrap(...)
6. ├─base::withCallingHandlers(...)
7. ├─base::do.call(optfun, arglist)
8. └─lme4 (local) `<fn>`(...)
9. ├─nM$newf(fn(nM$xeval()))
10. │ └─base::stopifnot(length(value <- as.numeric(value)) == 1L)
11. └─lme4 (local) fn(nM$xeval())
12. └─lme4 (local) pwrssUpdate(...)
[ FAIL 1 | WARN 0 | SKIP 63 | PASS 34 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [52s/80s] OK
- checking PDF version of manual ... [4s/7s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR