- using R version 4.4.2 (2024-10-31)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘comparison/DESCRIPTION’ ... OK
- this is package ‘comparison’ version ‘1.0.8’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘comparison’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/14s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) glass.Rd:10: Lost braces
10 | \item{item}{factor}{200 levels - which item the measurements came from}
| ^
checkRd: (-1) glass.Rd:11-12: Lost braces
11 | \item{fragment}{factor}{4 levels - which of the four fragments from each item the observations were made
| ^
checkRd: (-1) glass.Rd:13: Lost braces
13 | \item{logNaO}{numeric}{log of sodium concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:14: Lost braces
14 | \item{logMgO}{numeric}{log of magnesium concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:15: Lost braces
15 | \item{logAlO}{numeric}{log of aluminium concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:16: Lost braces
16 | \item{logSiO}{numeric}{log of silicon concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:17: Lost braces
17 | \item{logKO}{numeric}{log of potassium concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:18: Lost braces
18 | \item{logCaO}{numeric}{log of calcium concentration to oxygen concentration}
| ^
checkRd: (-1) glass.Rd:19: Lost braces
19 | \item{logFeO}{numeric}{log of iron concentration to oxygen concentration}
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [15s/21s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
two.level.components 4.225 0.034 6.006
two.level.density.LR 4.124 0.014 5.609
two.level.normal.LR 4.128 0.008 5.551
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [2s/2s] OK
Running ‘testCalcLR.R’ [2s/2s]
- checking PDF version of manual ... [5s/6s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE