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See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.3.0-12) 14.3.0’
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- checking Rd files ... [1s/1s] WARNING
prepare_Rd: ./man/GVME.Rd:21: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME.Rd:24: unknown macro '\bibcitet'
checkRd: (-1) GVME.Rd:21: Lost braces
21 | See \bibcitet{|Gordon+Vichi:2001|page 230}, for more details.
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checkRd: (-1) GVME.Rd:24: Lost braces
24 | Table 1 in \bibcitet{Gordon+Vichi:2001}.
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prepare_Rd: ./man/GVME_Consensus.Rd:6: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:15: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:20: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:21: unknown macro '\bibcitet'
prepare_Rd: ./man/GVME_Consensus.Rd:25: unknown macro '\bibcitet'
checkRd: (-1) GVME_Consensus.Rd:6: Lost braces
6 | partition data given in \bibcitet{Gordon+Vichi:2001}.
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checkRd: (-1) GVME_Consensus.Rd:15: Lost braces
15 | macroeconomic partition data in \bibcitet{Gordon+Vichi:2001}, which are
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checkRd: (-1) GVME_Consensus.Rd:20: Lost braces
20 | in \bibcitet{Gordon+Vichi:2001} and the approach in
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checkRd: (-1) GVME_Consensus.Rd:21: Lost braces
21 | \bibcitet{Sato+Sato:1994},
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checkRd: (-1) GVME_Consensus.Rd:25: Lost braces
25 | Tables 4 and 5 in \bibcitet{Gordon+Vichi:2001}.
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prepare_Rd: ./man/Kinship82.Rd:14: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:18: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:23: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82.Rd:29: unknown macro '\bibcitet'
checkRd: (-1) Kinship82.Rd:14: Lost braces
14 | \bibcitet{Rosenberg+Kim:1975} describe an experiment where perceived
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checkRd: (-1) Kinship82.Rd:18: Lost braces
18 | \bibcitet{Arabie+Carroll+DeSarbo:1987}, and are also contained in file
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checkRd: (-1) Kinship82.Rd:23: Lost braces
23 | \bibcitet{Rosenberg:1982}.
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checkRd: (-1) Kinship82.Rd:29: Lost braces
29 | Table 7.1 in \bibcitet{Rosenberg:1982}, with the \dQuote{nephew} and
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prepare_Rd: ./man/Kinship82_Consensus.Rd:6: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:16: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:17: unknown macro '\bibcitet'
prepare_Rd: ./man/Kinship82_Consensus.Rd:21: unknown macro '\bibcitet'
checkRd: (-1) Kinship82_Consensus.Rd:6: Lost braces
6 | kinship terms partition data given in \bibcitet{Gordon+Vichi:2001}.
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checkRd: (-1) Kinship82_Consensus.Rd:16: Lost braces
16 | applying models 1, 2, and 3 in \bibcitet{Gordon+Vichi:2001} to the
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checkRd: (-1) Kinship82_Consensus.Rd:17: Lost braces
17 | kinship terms partition data in \bibcitet{Rosenberg:1982}, which are
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checkRd: (-1) Kinship82_Consensus.Rd:21: Lost braces
21 | Table 6 in \bibcitet{Gordon+Vichi:2001}.
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prepare_Rd: ./man/Phonemes.Rd:14: unknown macro '\bibcitet'
checkRd: (-1) Phonemes.Rd:14: Lost braces
14 | \bibcitet{Miller+Nicely:1955}
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prepare_Rd: ./man/addtree.Rd:30: unknown macro '\bibcitet'
checkRd: (-1) addtree.Rd:30: Lost braces
30 | See, e.g., \bibcitet{Barthélemy+Guénoche:1991} for more details on
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prepare_Rd: ./man/cl_agreement.Rd:45: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:53: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:54: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:58: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:59: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:62: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:68: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:78: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_agreement.Rd:99: unknown macro '\bibcitet'
checkRd: (-1) cl_agreement.Rd:45: Lost braces
45 | See \bibcitet{Dimitriadou+Weingessel+Hornik:2002}.}
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checkRd: (-1) cl_agreement.Rd:53: Lost braces
53 | both partitions), see \bibcitet{Rand:1971} or
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checkRd: (-1) cl_agreement.Rd:54: Lost braces
54 | \bibcitet{|R:Gordon:1999|page 198}.
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checkRd: (-1) cl_agreement.Rd:58: Lost braces
58 | chance, see \bibcitet{Hubert+Arabie:1985} or
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checkRd: (-1) cl_agreement.Rd:59: Lost braces
59 | \bibcitet{|R:Gordon:1999|page 198}.
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checkRd: (-1) cl_agreement.Rd:62: Lost braces
62 | \bibcitet{Strehl+Ghosh:2002}.
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checkRd: (-1) cl_agreement.Rd:68: Lost braces
68 | see \bibcitet{Katz+Powell:1953}. For soft partitions, (currently) the
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checkRd: (-1) cl_agreement.Rd:78: Lost braces
78 | \item{\code{"FM"}}{the index of \bibcitet{Fowlkes+Mallows:1983}, i.e.,
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checkRd: (-1) cl_agreement.Rd:99: Lost braces
99 | \bibcitet{Tibshirani+Walther:2005}: the minimum, over all classes
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prepare_Rd: ./man/cl_bag.Rd:26: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_bag.Rd:53: unknown macro '\bibcitet'
checkRd: (-1) cl_bag.Rd:26: Lost braces
26 | \bibcitet{Dudoit+Fridlyand:2003}.}
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checkRd: (-1) cl_bag.Rd:53: Lost braces
53 | \bibcitet{Leisch:1999} and implemented by function
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prepare_Rd: ./man/cl_consensus.Rd:46: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:96: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:107: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:164: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_consensus.Rd:242: unknown macro '\bibcitet'
checkRd: (-1) cl_consensus.Rd:46: Lost braces
46 | See also \bibcitet{R:Gordon:1999} for more information.
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checkRd: (-1) cl_consensus.Rd:96: Lost braces
96 | model} in \bibcitet{Gordon+Vichi:2001} for minimizing \eqn{L}
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checkRd: (-1) cl_consensus.Rd:107: Lost braces
107 | \bibcitet{Dimitriadou+Weingessel+Hornik:2002} for (approximately)
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checkRd: (-1) cl_consensus.Rd:164: Lost braces
164 | model} in \bibcitet{Gordon+Vichi:2001} for minimizing \eqn{L} with
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checkRd: (-1) cl_consensus.Rd:242: Lost braces
242 | the majority consensus tree of \bibcitet{Margush+McMorris:1981},
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prepare_Rd: ./man/cl_dissimilarity.Rd:43: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:67: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:72: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:79: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:104: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:109: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:112: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:116: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:128: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:146: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:150: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:153: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:191: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_dissimilarity.Rd:195: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_dissimilarity.Rd:208: unknown macro '\bibcitet'
checkRd: (-1) cl_dissimilarity.Rd:43: Lost braces
43 | \eqn{v}. See \bibcitet{Dimitriadou+Weingessel+Hornik:2002}.}
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checkRd: (-1) cl_dissimilarity.Rd:67: Lost braces
67 | \bibcitet{Gordon+Vichi:2001},
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checkRd: (-1) cl_dissimilarity.Rd:72: Lost braces
72 | discussed in \bibcitet{Boorman+Arabie:1972}, with \var{d} one of
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checkRd: (-1) cl_dissimilarity.Rd:79: Lost braces
79 | partition into the other. Introduced in \bibcitet{Rubin:1967}.
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checkRd: (-1) cl_dissimilarity.Rd:104: Lost braces
104 | Introduced in \bibcitet{Rajski:1961}.
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checkRd: (-1) cl_dissimilarity.Rd:109: Lost braces
109 | \eqn{C} distance measures is hard to compute \bibcitep{Day:1981}
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checkRd: (-1) cl_dissimilarity.Rd:112: Lost braces
112 | \bibcitet{Meila:2003}. If
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checkRd: (-1) cl_dissimilarity.Rd:116: Lost braces
116 | \bibcitet{Zhou+Li+Zha:2005},
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checkRd: (-1) cl_dissimilarity.Rd:128: Lost braces
128 | \bibcitet{Zhou+Li+Zha:2005},
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checkRd: (-1) cl_dissimilarity.Rd:146: Lost braces
146 | \bibcitep{Charon+Denoeud+Guénoche:2006},
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checkRd: (-1) cl_dissimilarity.Rd:150: Lost braces
150 | \bibcitet{Day:1981},
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checkRd: (-1) cl_dissimilarity.Rd:153: Lost braces
153 | \emph{partition-distance} in \bibcitet{Gusfield:2002}, and equals
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checkRd: (-1) cl_dissimilarity.Rd:191: Lost braces
191 | \bibcitep{e.g.|Jardine+Sibson:1971|page 107},
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checkRd: (-1) cl_dissimilarity.Rd:195: Lost braces
195 | \bibcitet{Boorman+Olivier:1973}, which are of the form
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checkRd: (-1) cl_dissimilarity.Rd:208: Lost braces
208 | \bibcitet{Mérigot+Durbec+Gaertner:2010}.}
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prepare_Rd: ./man/cl_medoid.Rd:24: unknown macro '\bibcitet'
checkRd: (-1) cl_medoid.Rd:24: Lost braces
24 | See \bibcitet{R:Gordon:1999} for more information.
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prepare_Rd: ./man/cl_pam.Rd:20: unknown macro '\bibcitep'
prepare_Rd: ./man/cl_pam.Rd:46: unknown macro '\bibcitep'
checkRd: (-1) cl_pam.Rd:20: Lost braces
20 | \bibcitep{|Kaufman+Rousseeuw:1990|Chapter 2}
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checkRd: (-1) cl_pam.Rd:46: Lost braces
46 | Such secondary partitions \bibcitep{e.g.|Gordon+Vichi:1998|}
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prepare_Rd: ./man/cl_pclust.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) cl_pclust.Rd:59: Lost braces
59 | \bibcitet{Gaul+Schader:1988}
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prepare_Rd: ./man/cl_validity.Rd:40: unknown macro '\bibcitet'
prepare_Rd: ./man/cl_validity.Rd:42: unknown macro '\bibcitet'
checkRd: (-1) cl_validity.Rd:40: Lost braces
40 | (VAF, e.g., \bibcitet{Hubert+Arabie+Meulman:2006})
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checkRd: (-1) cl_validity.Rd:42: Lost braces
42 | (DEV, e.g., \bibcitet{Smith:2001}).
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prepare_Rd: ./man/kmedoids.Rd:35: unknown macro '\bibcitet'
prepare_Rd: ./man/kmedoids.Rd:42: unknown macro '\bibcitep'
checkRd: (-1) kmedoids.Rd:35: Lost braces
35 | Medoids, see \bibcitet{|Kaufman+Rousseeuw:1990|Chapter 2})
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checkRd: (-1) kmedoids.Rd:42: Lost braces
42 | \bibcitep{e.g.|Gordon+Vichi:1998|[P4']},
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prepare_Rd: ./man/l1_fit_ultrametric.Rd:35: unknown macro '\bibcitep'
prepare_Rd: ./man/l1_fit_ultrametric.Rd:56: unknown macro '\bibcitet'
checkRd: (-1) l1_fit_ultrametric.Rd:35: Lost braces
35 | \bibcitep{Křivánek+Morávek:1986}.
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checkRd: (-1) l1_fit_ultrametric.Rd:56: Lost braces
56 | Reweighted Iterative Projection approach of \bibcitet{Smith:2001},
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prepare_Rd: ./man/lattice.Rd:81: unknown macro '\bibcitet'
checkRd: (-1) lattice.Rd:81: Lost braces
81 | see \bibcitet{Barthélemy+Leclerc+Monjardet:1986}.
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prepare_Rd: ./man/ls_fit_addtree.Rd:45: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_addtree.Rd:46: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_addtree.Rd:51: unknown macro '\bibcitet'
checkRd: (-1) ls_fit_addtree.Rd:45: Lost braces
45 | \bibcitep{Sequential Unconstrained Minimization Technique|Fiacco+McCormick:1968|}
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checkRd: (-1) ls_fit_addtree.Rd:46: Lost braces
46 | approach of \bibcitet{De_Soete:1983}.
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checkRd: (-1) ls_fit_addtree.Rd:51: Lost braces
51 | \bibcitet{Hubert+Arabie:1995} and \bibcitet{Roux:1988}, respectively.
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checkRd: (-1) ls_fit_addtree.Rd:51: Lost braces
51 | \bibcitet{Hubert+Arabie:1995} and \bibcitet{Roux:1988}, respectively.
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prepare_Rd: ./man/ls_fit_sum_of_ultrametrics.Rd:34: unknown macro '\bibcitet'
checkRd: (-1) ls_fit_sum_of_ultrametrics.Rd:34: Lost braces
34 | \bibcitet{Carroll+Pruzansky:1980} which in each step \eqn{t} sequentially
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prepare_Rd: ./man/ls_fit_ultrametric.Rd:36: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:48: unknown macro '\bibcitep'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:49: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:50: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:57: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:88: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:122: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:123: unknown macro '\bibcitet'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:138: unknown macro '\bibinfo'
prepare_Rd: ./man/ls_fit_ultrametric.Rd:139: unknown macro '\bibinfo'
checkRd: (-1) ls_fit_ultrametric.Rd:36: Lost braces
36 | is known to be NP hard \bibcitep{Křivánek+Morávek:1986}.
| ^
checkRd: (-1) ls_fit_ultrametric.Rd:48: Lost braces
48 | \bibcitep{Sequential Unconstrained Minimization Technique|Fiacco+McCormick:1968|}
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checkRd: (-1) ls_fit_ultrametric.Rd:49: Lost braces
49 | approach of \bibcitet{De_Soete:1984a} which in turn simplifies the suggestions
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checkRd: (-1) ls_fit_ultrametric.Rd:50: Lost braces
50 | in \bibcitet{Carroll+Pruzansky:1980}. (See \code{\link{sumt}} for more
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checkRd: (-1) ls_fit_ultrametric.Rd:57: Lost braces
57 | \emph{incomplete}, we follow a suggestion of \bibcitet{De_Soete:1984a}, imputing
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checkRd: (-1) ls_fit_ultrametric.Rd:88: Lost braces
88 | \bibcitet{Hubert+Arabie:1995}. This iteratively projects the current
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checkRd: (-1) ls_fit_ultrametric.Rd:122: Lost braces
122 | suggested by \bibcitet{Roux:1988}, see also
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checkRd: (-1) ls_fit_ultrametric.Rd:123: Lost braces
123 | \bibcitet{Barthélemy+Guénoche:1991}.
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checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
138 | \bibinfo{De_Soete:1984a}{year}{1984a}
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checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
138 | \bibinfo{De_Soete:1984a}{year}{1984a}
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checkRd: (-1) ls_fit_ultrametric.Rd:138: Lost braces
138 | \bibinfo{De_Soete:1984a}{year}{1984a}
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checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
139 | \bibinfo{De_Soete:1984b}{year}{1984b}
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checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
139 | \bibinfo{De_Soete:1984b}{year}{1984b}
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checkRd: (-1) ls_fit_ultrametric.Rd:139: Lost braces
139 | \bibinfo{De_Soete:1984b}{year}{1984b}
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prepare_Rd: ./man/pclust.Rd:90: unknown macro '\bibcitet'
checkRd: (-1) pclust.Rd:90: Lost braces
90 | (e.g., \bibcitet{Bezdek:1981}) is used, which alternates between computing
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- DONE
Status: 1 WARNING