* using log directory ‘/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/biomod2.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-13 (Debian 13.2.0-25) 13.2.0
    GNU Fortran (Debian 13.2.0-25) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘biomod2/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘biomod2’ version ‘4.2-5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biomod2’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-release-linux-x86_64/biomod2-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [14s/16s] OK
* checking whether the package can be loaded with stated dependencies ... [13s/16s] OK
* checking whether the package can be unloaded cleanly ... [13s/17s] OK
* checking whether the namespace can be loaded with stated dependencies ... [13s/14s] OK
* checking whether the namespace can be unloaded cleanly ... [12s/14s] OK
* checking loading without being on the library search path ... [13s/16s] OK
* checking whether startup messages can be suppressed ... [13s/15s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [84s/91s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [12s/14s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [101s/120s] OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
BIOMOD_RangeSize           9.040  0.091  10.214
bm_PlotRangeSize           8.291  0.130   9.675
bm_Tuning                  7.793  0.091   8.611
BIOMOD.projection.out      6.185  0.151   8.843
BIOMOD.ensemble.models.out 6.014  0.090   7.421
BIOMOD.formated.data.PA    5.206  0.033   7.212
BIOMOD_EnsembleModeling    4.875  0.099   5.305
BIOMOD_Modeling            4.877  0.048   5.459
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [5s/8s] OK
* checking PDF version of manual ... [15s/19s] OK
* checking HTML version of manual ... [10s/12s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: OK