• using R version 4.6.1 (2026-06-24)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 09:24:17 UTC
• checking for file ‘biocharkitgui/DESCRIPTION’ ... OK
• this is package ‘biocharkitgui’ version ‘0.3.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘biocharkitgui’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/5s] ERROR   Running ‘testthat.R’ [3s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(biocharkitgui)   >   > test_check("biocharkitgui")   [ FAIL 2 | WARN 2 | SKIP 0 | PASS 58 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-report.R:41:3'): gui_render_report renders a real HTML file from a populated store ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─biocharkitgui::gui_render_report(store, out) at test-report.R:41:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")   ── Error ('test-report.R:58:3'): gui_render_report handles an entirely empty store gracefully ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─biocharkitgui::gui_render_report(empty_store, out) at test-report.R:58:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")      [ FAIL 2 | WARN 2 | SKIP 0 | PASS 58 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR