- using R version 4.6.1 (2026-06-24)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.2.0-3) 16.2.0
GNU Fortran (Debian 16.2.0-3) 16.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-09-26 09:58:14 UTC
- checking for file ‘bifrost/DESCRIPTION’ ... OK
- this is package ‘bifrost’ version ‘0.1.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘bifrost’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/5s] OK
- checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
- checking whether the package can be unloaded cleanly ... [4s/5s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
- checking loading without being on the library search path ... [4s/5s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [22s/25s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [14s/15s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
searchOptimalConfiguration 9.074 0.191 9.804
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [12s/15s] ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [12s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(bifrost)
>
> test_check("bifrost")
Loading required package: maps
Saving _problems/test-fitMvglsAndExtractGIC.formula-241.R
Loading required package: corpcor
Loading required package: subplex
##
## mvMORPH package (1.2.2)
## On est deja grands : ................. ##
## ,--. ,--. ##
## / | / \ ##
## `| || () | ##
## | | \ / ##
## `--' `--' ##
## _|____|_ ##
## | | ##
## +--------------+ ##
## | | ##
## +----------------------+ ##
## | | ##
## + ------------------------------ + ##
## __ __ ___ ___ ___ _ _ ##
## _ ____ _| \/ |/ _ \| _ \ _ \ || | ##
## | ' \ V / |\/| | (_) | / _/ __ | ##
## |_|_|_\_/|_| |_|\___/|_|_\_| |_||_| ##
##... et ce n'est que le debut :) ##
## Multivariate evolutionary models
##
## See the tutorials: browseVignettes("mvMORPH")
##
## To cite package 'mvMORPH': citation("mvMORPH")
##
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 410 ]
══ Skipped tests (3) ═══════════════════════════════════════════════════════════
• On CRAN (3): 'test-plot_ic_acceptance_matrix.R:3:1',
'test-print-bifrost_search.R:3:1', 'test-searchOptimalConfiguration.R:3:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-fitMvglsAndExtractGIC.formula.r:241:3'): mvgls options via ... are honoured (LL and PL-LOOCV) ──
Expected `is.finite(get_gic_scalar(r_ll$GIC))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 3 | PASS 410 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [5s/6s] OK
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR