Install log for 'bgms'

* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘bgms’ ...
** this is package ‘bgms’ version ‘0.1.6.2’
** package ‘bgms’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++20
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYlmkJW/R.INSTALLc8f7a5144b8e4/bgms/src'
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgm/bgm_helper.cpp -o bgm/bgm_helper.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgm/bgm_logp_and_grad.cpp -o bgm/bgm_logp_and_grad.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgm/bgm_sampler.cpp -o bgm/bgm_sampler.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgmCompare/bgmCompare_helper.cpp -o bgmCompare/bgmCompare_helper.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgmCompare/bgmCompare_logp_and_grad.cpp -o bgmCompare/bgmCompare_logp_and_grad.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgmCompare/bgmCompare_sampler.cpp -o bgmCompare/bgmCompare_sampler.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgmCompare_interface.cpp -o bgmCompare_interface.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bgm_interface.cpp -o bgm_interface.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c data_simulation.cpp -o data_simulation.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math/custom_exp.cpp -o math/custom_exp.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math/e_exp.cpp -o math/e_exp.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc/mcmc_hmc.cpp -o mcmc/mcmc_hmc.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc/mcmc_leapfrog.cpp -o mcmc/mcmc_leapfrog.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc/mcmc_nuts.cpp -o mcmc/mcmc_nuts.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc/mcmc_rwm.cpp -o mcmc/mcmc_rwm.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmc/mcmc_utils.cpp -o mcmc/mcmc_utils.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c priors/sbm_edge_prior.cpp -o priors/sbm_edge_prior.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sbm_edge_prior_interface.cpp -o sbm_edge_prior_interface.o
g++-14 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -DARMA_NO_DEBUG -I. -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/dqrng/include' -I'/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utils/progress_manager.cpp -o utils/progress_manager.o
g++-14 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o bgms.so RcppExports.o bgm/bgm_helper.o bgm/bgm_logp_and_grad.o bgm/bgm_sampler.o bgmCompare/bgmCompare_helper.o bgmCompare/bgmCompare_logp_and_grad.o bgmCompare/bgmCompare_sampler.o bgmCompare_interface.o bgm_interface.o data_simulation.o math/custom_exp.o math/e_exp.o mcmc/mcmc_hmc.o mcmc/mcmc_leapfrog.o mcmc/mcmc_nuts.o mcmc/mcmc_rwm.o mcmc/mcmc_utils.o priors/sbm_edge_prior.o sbm_edge_prior_interface.o utils/progress_manager.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYlmkJW/R.INSTALLc8f7a5144b8e4/bgms/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYlmkJW/R.INSTALLc8f7a5144b8e4/bgms/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYlmkJW/R.INSTALLc8f7a5144b8e4/bgms/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-bgms/00new/bgms/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bgms)