- using R version 4.5.1 (2025-06-13)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-8) 14.3.0
GNU Fortran (Debian 14.3.0-8) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘beyondWhittle/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘beyondWhittle’ version ‘1.3.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘beyondWhittle’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
- used C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the package can be unloaded cleanly ... [0s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [19s/24s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [93s/114s] ERROR
Running ‘testthat.R’ [93s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(beyondWhittle)
>
> test_check("beyondWhittle")
[1] "MCMC iteration 500/2000 (CPU time: 0.45s)"
[1] "MCMC iteration 1000/2000 (CPU time: 0.81s)"
[1] "MCMC iteration 1500/2000 (CPU time: 1.15s)"
[1] "MCMC iteration 2000/2000 (CPU time: 1.47s)"
Precomputing beta basis functions .......... done!
Precomputing beta basis functions .......... done!
[1] "MCMC iteration 100/2000 (CPU time: 0.52s)"
[1] "MCMC iteration 200/2000 (CPU time: 0.9s)"
[1] "MCMC iteration 300/2000 (CPU time: 1.31s)"
[1] "MCMC iteration 400/2000 (CPU time: 1.9s)"
[1] "MCMC iteration 500/2000 (CPU time: 2.66s)"
[1] "MCMC iteration 600/2000 (CPU time: 3.15s)"
[1] "MCMC iteration 700/2000 (CPU time: 3.74s)"
[1] "MCMC iteration 800/2000 (CPU time: 4.27s)"
[1] "MCMC iteration 900/2000 (CPU time: 4.69s)"
[1] "MCMC iteration 1000/2000 (CPU time: 5.15s)"
[1] "MCMC iteration 1100/2000 (CPU time: 5.77s)"
[1] "MCMC iteration 1200/2000 (CPU time: 6.19s)"
[1] "MCMC iteration 1300/2000 (CPU time: 6.72s)"
[1] "MCMC iteration 1400/2000 (CPU time: 7.5s)"
[1] "MCMC iteration 1500/2000 (CPU time: 8.16s)"
[1] "MCMC iteration 1600/2000 (CPU time: 8.54s)"
[1] "MCMC iteration 1700/2000 (CPU time: 8.97s)"
[1] "MCMC iteration 1800/2000 (CPU time: 9.4s)"
[1] "MCMC iteration 1900/2000 (CPU time: 9.81s)"
[1] "MCMC iteration 2000/2000 (CPU time: 10.24s)"
Precomputing beta basis functions ... done!
Precomputing beta basis functions . done!
Using standard Bernstein polynomials on ( 0.1 , 0.9 )
Precomputing polynomial basis functions .................................................. done!
[1] "MCMC iteration 100/2000 (CPU time: 1.22s)"
[1] "MCMC iteration 200/2000 (CPU time: 2.56s)"
[1] "MCMC iteration 300/2000 (CPU time: 3.79s)"
[1] "MCMC iteration 400/2000 (CPU time: 4.91s)"
[1] "MCMC iteration 500/2000 (CPU time: 6.02s)"
[1] "MCMC iteration 600/2000 (CPU time: 7.24s)"
[1] "MCMC iteration 700/2000 (CPU time: 8.25s)"
[1] "MCMC iteration 800/2000 (CPU time: 9.39s)"
[1] "MCMC iteration 900/2000 (CPU time: 10.26s)"
[1] "MCMC iteration 1000/2000 (CPU time: 11.17s)"
[1] "MCMC iteration 1100/2000 (CPU time: 12.08s)"
[1] "MCMC iteration 1200/2000 (CPU time: 13s)"
[1] "MCMC iteration 1300/2000 (CPU time: 13.89s)"
[1] "MCMC iteration 1400/2000 (CPU time: 14.78s)"
[1] "MCMC iteration 1500/2000 (CPU time: 15.78s)"
[1] "MCMC iteration 1600/2000 (CPU time: 16.73s)"
[1] "MCMC iteration 1700/2000 (CPU time: 17.7s)"
[1] "MCMC iteration 1800/2000 (CPU time: 18.55s)"
[1] "MCMC iteration 1900/2000 (CPU time: 19.37s)"
[1] "MCMC iteration 2000/2000 (CPU time: 20.72s)"
Using standard Bernstein polynomials on ( 0.1 , 0.9 )
Precomputing polynomial basis functions .................................................. done!
[1] "MCMC iteration 100/2000 (CPU time: 2s)"
[1] "MCMC iteration 200/2000 (CPU time: 4.04s)"
[1] "MCMC iteration 300/2000 (CPU time: 5.84s)"
[1] "MCMC iteration 400/2000 (CPU time: 7.71s)"
[1] "MCMC iteration 500/2000 (CPU time: 9.7s)"
[1] "MCMC iteration 600/2000 (CPU time: 11.89s)"
[1] "MCMC iteration 700/2000 (CPU time: 13.62s)"
[1] "MCMC iteration 800/2000 (CPU time: 15.27s)"
[1] "MCMC iteration 900/2000 (CPU time: 17.08s)"
[1] "MCMC iteration 1000/2000 (CPU time: 18.99s)"
[1] "MCMC iteration 1100/2000 (CPU time: 20.58s)"
[1] "MCMC iteration 1200/2000 (CPU time: 22.91s)"
[1] "MCMC iteration 1300/2000 (CPU time: 25.18s)"
[1] "MCMC iteration 1400/2000 (CPU time: 27.44s)"
[1] "MCMC iteration 1500/2000 (CPU time: 29.23s)"
[1] "MCMC iteration 1600/2000 (CPU time: 30.84s)"
[1] "MCMC iteration 1700/2000 (CPU time: 32.64s)"
[1] "MCMC iteration 1800/2000 (CPU time: 34.43s)"
[1] "MCMC iteration 1900/2000 (CPU time: 35.84s)"
[1] "MCMC iteration 2000/2000 (CPU time: 37.24s)"
[1] "MCMC iteration 500/2000 (CPU time: 3.07s)"
[1] "MCMC iteration 1000/2000 (CPU time: 6.49s)"
[1] "MCMC iteration 1500/2000 (CPU time: 10.16s)"
[1] "MCMC iteration 2000/2000 (CPU time: 13.8s)"
Using standard Bernstein polynomials on ( 0.1 , 0.9 )
Precomputing polynomial basis functions .................................................. done!
[1] "MCMC iteration 100/2000 (CPU time: 0.56s)"
[1] "MCMC iteration 200/2000 (CPU time: 1.51s)"
[1] "MCMC iteration 300/2000 (CPU time: 2.46s)"
[1] "MCMC iteration 400/2000 (CPU time: 3.22s)"
[1] "MCMC iteration 500/2000 (CPU time: 3.9s)"
[1] "MCMC iteration 600/2000 (CPU time: 4.56s)"
[1] "MCMC iteration 700/2000 (CPU time: 5.22s)"
[1] "MCMC iteration 800/2000 (CPU time: 5.87s)"
[1] "MCMC iteration 900/2000 (CPU time: 6.72s)"
[1] "MCMC iteration 1000/2000 (CPU time: 7.47s)"
[1] "MCMC iteration 1100/2000 (CPU time: 8.09s)"
[1] "MCMC iteration 1200/2000 (CPU time: 9.02s)"
[1] "MCMC iteration 1300/2000 (CPU time: 9.74s)"
[1] "MCMC iteration 1400/2000 (CPU time: 10.43s)"
[1] "MCMC iteration 1500/2000 (CPU time: 11.09s)"
[1] "MCMC iteration 1600/2000 (CPU time: 12.06s)"
[1] "MCMC iteration 1700/2000 (CPU time: 13.03s)"
[1] "MCMC iteration 1800/2000 (CPU time: 13.66s)"
[1] "MCMC iteration 1900/2000 (CPU time: 14.25s)"
[1] "MCMC iteration 2000/2000 (CPU time: 15s)"
Postprocessing...[1] "done!"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 23 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testGibbsVNP.R:8:3'): gibbs_vnp runs on sample white noise data ───
any(is.na(mcmc$lpost)) is not FALSE
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 23 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [9s/12s] OK
- checking HTML version of manual ... [3s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR