Install log for 'automerge'

* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘automerge’ ...
** this is package ‘automerge’ version ‘0.2.1’
** package ‘automerge’ successfully unpacked and MD5 sums checked
** using staged installation
Checking for system automerge installation...
System automerge not found, building from bundled source...
Building automerge-c...
using Rust package manager: 'cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)'
using Rust compiler: 'rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)'
Extracting vendored Rust dependencies...
-- The C compiler identification is GNU 14.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-14 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Configuring done (1.5s)
-- Generating done (0.0s)
-- Build files have been written to: /home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build
Building (this may take several minutes)...
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build'
[ 12%] Producing the bindings' artifacts with Cargo...
-- Touching "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/automerge.h"...
-- Touched "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/automerge-c/cbindgen.toml".
warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
package:   /home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/hexane/Cargo.toml
workspace: /home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/Cargo.toml
   Compiling proc-macro2 v1.0.106
   Compiling quote v1.0.44
   Compiling unicode-ident v1.0.22
   Compiling libc v0.2.180
   Compiling serde_core v1.0.228
   Compiling syn v2.0.114
   Compiling cfg-if v1.0.4
   Compiling typenum v1.19.0
   Compiling version_check v0.9.5
   Compiling generic-array v0.14.7
   Compiling zerocopy v0.8.37
   Compiling zmij v1.0.19
   Compiling serde_derive v1.0.228
   Compiling serde v1.0.228
   Compiling serde_json v1.0.149
   Compiling winnow v0.7.14
   Compiling toml_parser v1.0.6+spec-1.1.0
   Compiling getrandom v0.2.17
   Compiling toml_datetime v0.7.5+spec-1.1.0
   Compiling serde_spanned v1.0.4
   Compiling cbindgen v0.29.2
   Compiling equivalent v1.0.2
   Compiling hashbrown v0.16.1
   Compiling remove_dir_all v0.5.3
   Compiling crc32fast v1.5.0
   Compiling thiserror v2.0.18
   Compiling itoa v1.0.17
   Compiling memchr v2.7.6
   Compiling fastrand v1.9.0
   Compiling tempfile v3.3.0
   Compiling ppv-lite86 v0.2.21
   Compiling indexmap v2.13.0
   Compiling toml v0.9.11+spec-1.1.0
   Compiling rand_core v0.6.4
   Compiling crypto-common v0.1.7
   Compiling block-buffer v0.10.4
   Compiling thiserror-impl v2.0.18
   Compiling log v0.4.29
   Compiling heck v0.5.0
   Compiling once_cell v1.21.3
   Compiling simd-adler32 v0.3.8
   Compiling adler2 v2.0.1
   Compiling miniz_oxide v0.8.9
   Compiling tracing-core v0.1.36
   Compiling digest v0.10.7
   Compiling rand_chacha v0.3.1
   Compiling tracing-attributes v0.1.31
   Compiling either v1.15.0
   Compiling pin-project-lite v0.2.16
   Compiling leb128 v0.2.5
   Compiling cpufeatures v0.2.17
   Compiling tinyvec_macros v0.1.1
   Compiling tinyvec v1.10.0
   Compiling sha2 v0.10.9
   Compiling hexane v0.1.7 (/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/hexane)
   Compiling automerge-c v0.3.0 (/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/automerge-c)
   Compiling tracing v0.1.44
   Compiling itertools v0.14.0
   Compiling flate2 v1.1.8
   Compiling rand v0.8.5
   Compiling smol_str v0.2.2
   Compiling hex v0.4.3
   Compiling unicode-segmentation v1.12.0
   Compiling rustc-hash v2.1.1
   Compiling automerge v0.7.3 (/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src/automerge/rust/automerge)
    Finished `release` profile [optimized] target(s) in 3m 23s
-- Replacing "A_M([^_]+)_" with "AM_\1_" in "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/automerge.h".
-- Replacing "USIZE_" with "+8" in "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/automerge.h"...
-- Created/updated "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/automerge.h".
[ 12%] Built target automerge_core_artifacts
[ 25%] Generating the enum string functions with CMake...
-- Generating header file "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/include/automerge-c/utils/enum_string.h"...
-- Generating source file "/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/src/utils/enum_string.c"...
[ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o
[ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o
[ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o
[ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o
[ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o
[100%] Linking C static library libautomerge.a
Merging the libraries' constituent object files...
Merging its dependent libraries into /home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/libautomerge.a...
/usr/bin/ar -x  /home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a
/usr/bin/ar -rs libautomerge.a objects/automerge_core/*.o
[100%] Built target automerge
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build'
gmake[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build'
[ 12%] Built target automerge_core_artifacts
[100%] Built target automerge
Install the project...
-- Install configuration: "Release"
gmake[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/am-build'
Successfully built automerge-c from source
Configuration:
  PKG_CFLAGS: -I../am-install/include
  PKG_LIBS: ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cursors.c -o cursors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c document.c -o document.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c errors.c -o errors.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c memory.c -o memory.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c objects.c -o objects.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../am-install/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sync.c -o sync.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o automerge.so cursors.o document.o errors.o init.o memory.o objects.o sync.o ../am-install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ2rrok/R.INSTALL36aba643446218/automerge/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-automerge/00new/automerge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (automerge)