• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘admiralonco/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘admiralonco’ version ‘1.3.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘admiralonco’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/13s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [25s/37s] OK Examples with CPU (user + system) or elapsed time > 5s                              user system elapsed derive_param_confirmed_bor 8.336 0.053 11.875 derive_param_confirmed_resp 8.054 0.028 13.504
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [49s/65s] ERROR   Running ‘testthat.R’ [48s/64s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat) # nolint: undesirable_function_linter   > library(admiralonco) # nolint: undesirable_function_linter   >   > test_check("admiralonco")   Saving _problems/test-derive_param_confirmed_bor-243.R   Saving _problems/test-derive_param_confirmed_resp-210.R   Saving _problems/test-filter_pd-247.R   [ FAIL 3 | WARN 12 | SKIP 0 | PASS 33 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-derive_param_confirmed_bor.R:227:3'): derive_param_confirmed_bor Test 3: error if invalid response values ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `enumerate()` was deprecated in admiraldev 1.1.0 and is now defunct.   i This function was primarily used in error messaging, and can be replaced with 'cli' functionality: `cli::cli_abort('{.val {letters[1:3]}}')`   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-derive_param_confirmed_bor.R:227:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─admiralonco::derive_param_confirmed_bor(...)     8. ├─rlang::abort(...)     9. │ └─rlang::is_formula(message, scoped = TRUE, lhs = FALSE)    10. ├─base::paste0(...)    11. └─admiraldev::enumerate(valid_vals)    12. └─lifecycle::deprecate_stop(...)    13. └─lifecycle:::deprecate_stop0(msg)    14. └─rlang::cnd_signal(...)   ── Error ('test-derive_param_confirmed_resp.R:196:3'): derive_param_confirmed_resp Test 3: error if invalid response values ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `enumerate()` was deprecated in admiraldev 1.1.0 and is now defunct.   i This function was primarily used in error messaging, and can be replaced with 'cli' functionality: `cli::cli_abort('{.val {letters[1:3]}}')`   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-derive_param_confirmed_resp.R:196:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─admiralonco::derive_param_confirmed_resp(...)     8. ├─rlang::abort(...)     9. │ └─rlang::is_formula(message, scoped = TRUE, lhs = FALSE)    10. ├─base::paste0(...)    11. └─admiraldev::enumerate(valid_vals)    12. └─lifecycle::deprecate_stop(...)    13. └─lifecycle:::deprecate_stop0(msg)    14. └─rlang::cnd_signal(...)   ── Error ('test-filter_pd.R:229:3'): filter_pd Test 5: error if invalid source_datasets ──   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `enumerate()` was deprecated in admiraldev 1.1.0 and is now defunct.   i This function was primarily used in error messaging, and can be replaced with 'cli' functionality: `cli::cli_abort('{.val {letters[1:3]}}')`   Backtrace:        ▆     1. ├─testthat::expect_error(...) at test-filter_pd.R:229:3     2. │ └─testthat:::expect_condition_matching_(...)     3. │ └─testthat:::quasi_capture(...)     4. │ ├─testthat (local) .capture(...)     5. │ │ └─base::withCallingHandlers(...)     6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     7. └─admiralonco::filter_pd(...)     8. ├─rlang::abort(...)     9. │ └─rlang::is_formula(message, scoped = TRUE, lhs = FALSE)    10. ├─base::paste0(...)    11. └─admiraldev::enumerate(source_names, quote_fun = squote)    12. └─lifecycle::deprecate_stop(...)    13. └─lifecycle:::deprecate_stop0(msg)    14. └─rlang::cnd_signal(...)      [ FAIL 3 | WARN 12 | SKIP 0 | PASS 33 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [111s/149s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR