• using R version 4.5.2 (2025-10-31)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘adjclust/DESCRIPTION’ ... OK
• this is package ‘adjclust’ version ‘0.6.10’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘adjclust’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
• used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [21s/24s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [31s/40s] ERROR   Running ‘testthat.R’ [31s/39s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library("testthat")   > library("adjclust")   >   > test_check("adjclust")   Saving _problems/test_modify-19.R   object has no names - using numeric order for row/column names   [ FAIL 1 | WARN 1 | SKIP 3 | PASS 171 ]      ══ Skipped tests (3) ═══════════════════════════════════════════════════════════   • No NA value: nothing to test here! (3): 'test_snpClust_NA-in-LD.R:22:3',     'test_snpClust_NA-in-LD.R:57:3', 'test_snpClust_NA-in-LD.R:78:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_modify.R:19:3'): Results of the algorithm are shifted by lambda when similarity is unnormalized and heights are positive ──   Error in `expect_message(fit4 <- adjClust(sim2), fit3$correction)`: `regexp` must be a single string, `NA`, or `NULL`, not the number 1.8.   Backtrace:       ▆    1. └─testthat::expect_message(regexp = fit3$correction) at test_modify.R:19:3    2. └─testthat:::check_string(regexp, allow_null = TRUE, allow_na = TRUE)    3. └─testthat:::stop_input_type(...)    4. └─rlang::abort(message, ..., call = call, arg = arg)      [ FAIL 1 | WARN 1 | SKIP 3 | PASS 171 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [38s/51s] OK
• checking PDF version of manual ... [6s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR