* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’
* installing *source* package ‘adespatial’ ...
** this is package ‘adespatial’ version ‘0.3-28’
** package ‘adespatial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0e0HZZ/R.INSTALL2332c451029474/adespatial/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o
betadiv.c: In function ‘euclidean’:
betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
36 | for (i = 0; i < I; i++)
| ^~~
In file included from betadiv.c:7:
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’
42 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘manhattan’:
betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
476 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’
483 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘canberra’:
betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
506 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’
530 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘kulczynski’:
betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
549 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’
563 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘divergence’:
betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
586 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’
608 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘modmean’:
betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
630 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’
646 | UNPROTECT(4);
| ^~~~~~~~~
betadiv.c: In function ‘whittaker’:
betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
701 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’
718 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘wishart’:
betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
737 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’
752 | UNPROTECT(3);
| ^~~~~~~~~
betadiv.c: In function ‘percentdiff’:
betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
982 | for (i = 0; i < I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’
1000 | UNPROTECT(6);
| ^~~~~~~~~
betadiv.c: In function ‘binary_D’:
betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
1020 | for (i=0; i<I; i++)
| ^~~
/home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
389 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’
1035 | UNPROTECT(4);
| ^~~~~~~~~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c buildbinary.c -o buildbinary.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constr.hclust.c -o constr.hclust.o
constr.hclust.c: In function ‘initNNlist’:
constr.hclust.c:110:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
110 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:100:25: note: ‘nn’ was declared here
100 | unsigned int i, j, k, nn;
| ^~
constr.hclust.c: In function ‘updateNNlist’:
constr.hclust.c:131:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
131 | nn_idx[i] = nn;
| ~~~~~~~~~~^~~~
constr.hclust.c:122:22: note: ‘nn’ was declared here
122 | unsigned int j, k, nn;
| ^~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forward.c -o forward.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c geoddist.f -o geoddist.o
f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs]
geoddist.f:67:14:
67 | end if
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c geodistv.f -o geodistv.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stipermute.c -o stipermute.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testsmoran.c -o testsmoran.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o geoddist.o geodistv.o init.o stipermute.o testsmoran.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0e0HZZ/R.INSTALL2332c451029474/adespatial/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0e0HZZ/R.INSTALL2332c451029474/adespatial/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0e0HZZ/R.INSTALL2332c451029474/adespatial/src'
installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-adespatial/00new/adespatial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adespatial)