* installing to library ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages’ * installing *source* package ‘adespatial’ ... ** this is package ‘adespatial’ version ‘0.3-28’ ** package ‘adespatial’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPYY3Su/R.INSTALL170d2738039970/adespatial/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c WRperiodogram.c -o WRperiodogram.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c adesub.c -o adesub.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c betadiv.c -o betadiv.o betadiv.c: In function ‘euclidean’: betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 36 | for (i = 0; i < I; i++) | ^~~ In file included from betadiv.c:7: /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’ 42 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘manhattan’: betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 476 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’ 483 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘canberra’: betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 506 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’ 530 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘kulczynski’: betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 549 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’ 563 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘divergence’: betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 586 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’ 608 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘modmean’: betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 630 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’ 646 | UNPROTECT(4); | ^~~~~~~~~ betadiv.c: In function ‘whittaker’: betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 701 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’ 718 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘wishart’: betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 737 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’ 752 | UNPROTECT(3); | ^~~~~~~~~ betadiv.c: In function ‘percentdiff’: betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 982 | for (i = 0; i < I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’ 1000 | UNPROTECT(6); | ^~~~~~~~~ betadiv.c: In function ‘binary_D’: betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1020 | for (i=0; i<I; i++) | ^~~ /home/hornik/tmp/R.check/r-release-gcc/Work/build/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 389 | #define UNPROTECT(n) Rf_unprotect(n) | ^~~~~~~~~~~~ betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’ 1035 | UNPROTECT(4); | ^~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c buildbinary.c -o buildbinary.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constr.hclust.c -o constr.hclust.o constr.hclust.c: In function ‘initNNlist’: constr.hclust.c:110:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 110 | nn_idx[i] = nn; | ~~~~~~~~~~^~~~ constr.hclust.c:100:25: note: ‘nn’ was declared here 100 | unsigned int i, j, k, nn; | ^~ constr.hclust.c: In function ‘updateNNlist’: constr.hclust.c:131:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized] 131 | nn_idx[i] = nn; | ~~~~~~~~~~^~~~ constr.hclust.c:122:22: note: ‘nn’ was declared here 122 | unsigned int j, k, nn; | ^~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forward.c -o forward.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c geoddist.f -o geoddist.o f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs] geoddist.f:67:14: 67 | end if | 1 Warning: Nonconforming tab character at (1) [-Wtabs] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c geodistv.f -o geodistv.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stipermute.c -o stipermute.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-release-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c testsmoran.c -o testsmoran.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -Wl,-O1 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o geoddist.o geodistv.o init.o stipermute.o testsmoran.o -llapack -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-release-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPYY3Su/R.INSTALL170d2738039970/adespatial/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPYY3Su/R.INSTALL170d2738039970/adespatial/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPYY3Su/R.INSTALL170d2738039970/adespatial/src' installing to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/00LOCK-adespatial/00new/adespatial/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adespatial)